RNA id: TU160405


Basic Information

Item Value
RNA id TU160405
length 6858
lncRNA type sense_over
GC content 0.41
exon number 3
gene id LOC120568429
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 30440889 ~ 30477185 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGTTTTTTATGTCCGCTCCGTAGTCTGTCTATAGTCAGCTCAGACAACTGATAGATACATACTGCGCCATTCAATTAAGCAGAGTGGTTGCCCTCCGAGAACCAGACAATACGACAATATgatacgatacaactttattgtcagtttACACTGAAATTAATTTTGCGTTCCCAAGCAGCTCagttaaaaaaaggaaagaaaatacacacaaagtTAGACAACATTTACACATATAATACAAAGATGAAAACACATCTACAGCCATGACTAAGAAACATGTTTCATGTTTCatacacaccagactccatgtaaataaacagtacttttgTCATCTTTAAACACACTTCACTCAAAGTTGACAGTAGCTGTATTGCTTCGTCTTTCCACtattccaacaatcaccactctggttggGTTTAAATTAACCCTAAACTCACCCATTTATATGTGActatatgctggctctatacacactaaaagtactgtgtatttacatggagtctggtgggtttgatGACGGTGAATTCAGggctttttcatgttaaacaaaaaagaaCTTACTCTTTACCAAAAAGGTCTATTTTTGTAGGATTCCATAatattgtcagacacttagaataataatctgagcctttcacaaaatattgtcttaatgtaagtaatcaactggggaagtttcatggaGATACCTCCCCTTAACAAGGGCTGCAATGGGAAattcagtatttttcaatacttCTTTTCTCAGGACTGATTTCTCAGGACTTTTTAAGTTGAAGTTATAGAGGAGACTTTTATGAGACTAGATCAGTTGAAAGAGTTTCTTTTGCAATGTGTATTGGGTCATGTTGCATAATGCCTGTACTATGATTTTTCCTTGTACCACTTAGAAGTCTAGCGGCTGTGTTTTGGACCATTTGGAGTCTGGAAAGGGTGGAGTGGGGCAAACCACAATAATCAATCCGAGAGATGATGAAAGCATGAATTAGTATTTCCAGGTCTTGGCGGGATACAAGCGGTTTTCATTTGGTTAGGGTTCTAAGCTGGTAAAAGCTGCCTTTCACTACACAACTGACTTGTTTGTCAAAGTTCAGTGAAGTGTCCAGGAAGACAACAATATGTTTAAGTACGTAATTTAAGTTTGCAGAGAGGGGACCAAGCACTTTGGTTGAGCTGGCAACAGAGCACGGCGAGCCATACATAatcacttcagttttgtttccATTTAATTGAAGGAAGTTTGCAGCCATCCAACATTTTATGTCACTTAGACAATCAGAAAGGTTTTTTAGAGAGCAGGTGTCATTAGGAGTAACCGTAATGTCAAATTGTGTATCGTCTGCGTGATAATGACACAAAATGTTATGTTTCTCAAAAATAGAGCCAAGGGGAAGCATATACAAGGAAAATAAATGAGGACCTAATATTGAACCTTGGGGAATTCAACATTTAAAGGGAGCAGGGGATGAGGAGCAATTTCCTATTGTGACAGATAGGAGGCAAACCATATAGGAGGCAAACATATTCTGGACATGAGAGAAATGATGACTCTGTCTCCATAGGGTTGCAGTTTTGGACCGAGTGACAGACTTCCTGTTGTTTCTGGGCAAAGTGCTGATAGCAGGAGGAGTTGGTGTGGCtgcattcttcttcttcactaggAAGATCCCTGTTATCCAGGAGGAGGAGCCCGACCTCAACTACTACTGGGTCCCCCTGCTGACGGTGGTGATGGGTGCCTACCTGATCGCTCATGGTTTCTTCAGCGTCTATGCCATGTGTGTTGACACGCTCTTCCTCTGCTTCTGTAAGTGAACACCATCATTACTGTTTTTAGTCAGAAATAAAGTAGTGCAGGTACAGTGATTCAGAATGGGATGCTCTGCTCTGAAACAGGTTCAGGCTTCTATGGTCAGGCATTATTTAAACATAGAAATTATTTGGTTTTACCTTAAAATACTCTAGATATATAATGCCTTCACATCAGGACCACAAGGTTTGTAGTGTTCACTTAGTGAGAATGACAGTTGTTTTTAACATACAGCATAGTGAGCAAGGGAACTGTGGAGCATTTCACGAATGAATATCTGGCAGCATCTGCAGGTATGCAGTGATGTCCATACTGACACAAGCAATTGTATGTCATGTATGGTCTTCCATTAGCTCTATTTCCAGCACTGTGGAGTGAGGTCTGCctccaccacagatgcattctgggataggagaaaaaaaacgctcaGGTTTGTtcattaaaccaatcacaatcgactCTGCTAAATAGTAGTATAAAAGGAacgtgttttggtggaacatttgcatcccgcaaaagaaaacaccagaTACAATATTCAATGAAGTTGACAATgtaagctatttaaattagctggatacatggttaaacctctttggctcttaccagtgtatcgctgtgtgtactttgtccacagcaatcccacccgTCAGTCACAAAATGTCCCAGTAAGAGAGGAAATTCCCTaaatatattctttgtaaatctttacaataattccccaaaagaaccaagcagacctgccttgttgcaccatccaaattctctttaaaagttgacattttcagcgAGTAGCTtactagctcgaagtttgttgttgtttcccgaagagaaTGAAGTTTGAGAACGGAAACcaacagagaggaaagagaaggatgtcaggctttatcccagagAAGCGTACTGTCGTTGACCCAGACTATGTTATGTATGAATCTAGTTAAAGCTTTAATGcggaacattttgatattaataaacgttacattcaagctattgccaaatgagttgctacaaagttaattaagactatcagctccacacaactctctgtatttctcagtatggctatgttcagacgATTGTgttgtccggtgactttcccgcacagaaactcgagtgaagataatgacctcttctgaagagtccatcatgttaatcctccgtgtcctccttggctactagcaactgtgtggaggaggctgtatcatgtggacgcactgacagttttgttgtcattacatgAGAATTCCTcgtgggggagacagaaaatacgcactatagctttaaacaatCAATACCAGATGTGAGCACTTCTTCTAACAGATCAGATCACAGAGCCTTAGACACATACTGCCGGCTGCTGGGATTACCCAAGCCGTATTGATGCAGCACCTGGTGTAGATATCCTTCAGGCAGGCTCGGCCCAGCCAACCTCTCTCTGCAGGGCCTGACCATCCCGTTCACTGCTGTTCCCCTACAACATTACTATTACTCGAATAAAAATCATATACTGATGCACTGTGATGGGTTTAAAAGGGTTTACTCTCTCATCCAACACCATGTATTAAAATGCGTTTTTCTTCTCCAAACATTGCCATCTACATGTTCAGTTTATACTTTGGTTAAACGTTTCCACCAGGTAGAACAGAATTGTAATCGTTGGAGTGAAACCTGCGCTCTTTGCATGCATGTGTCTATCTACCAACACTAACTAACCctttttgtctctatttcatTTCGAATCACCCTGCTATCTACTTCCCATCCATACATCTTCATTTGACCTTTGTCCTCAAACTTTAACTCCCTTGACTTCCTCCACCTCCATCaaacccatccatccatccctgcTTTTTCTGCCATGCTTCCATGCGATCCATGTATCGGTCCAACAAGGCGATGACTTGGAGAGGCATGATGGGAGTTCAGAAAGACCTTTCCTCATGTCCCCAGAGCTGCACAGAATTTTGGGGAAATCCAGCCAGTCGCGTTGATATGTGATCCTCCTGTCCCGTCCCTGAGCAGCCAGTGTGCTGAGTGGACCATGCTCTCTGTAACACTGCACAGGGCCGACAGGTCTGGCTGCTAGGCAACATGtggagcagcaggagcagcattCCTCATGATTACCACTCAGCAACAGTGACAGGCACATGTCAGACATGTATGGAACCAATAGTAAAGTCAGAATCAAAGACTTCTCAAAGTTCCCTTCCAGCGAGGCCGTTGCAGTGTTTAGCGCTGCAGTCGTCAGTCTGAAGTCATGTTTAAGCCCTGAAATGAGTCAGTGAGAAGAACCTTGTTTTGTATTAAGATTCAGTTCATGTGTTTGAAAAAGCCTCCTTTGAACTTCTAATTGTACCttttaatgtgttgtgtgtttttggatGAATGTTCGAAAAAATGTTTGGCAAAAACTTGAAAATGTGTGAAAATCACTTTGTACCAAATGCTTCACCTCAAGTTTCAAATCATTTATACAGCCTGTTCCTTTTATAAGATGGATTGATTTTGTATTgggtctttgttttttttattcataaagcTGATtcaattaaaatacaataaaaaaatattaaacatgTCTTTTTCTTCAGCACCAATGTCAAACTAAAAGGTAAACTAAAATAAGTGATGATAAAAATAATTTGTAGTTCCAGAATTTAGTGGTGATGATTTGTGAATACGTTATGTTGGATTTTATCTtgtaacatgtaaaaaaaaaaaacatcatcagGAGCACTTTGGTGTCAGGAAATAAACTACGCAGCTTGAAAGATAGGCGTCAGACTTGGCGGCTAATGCCTGCCGCTGCTAGTATTGAAGCAATCCTTTTTTCTTCCAAAATGTTTAGAATGATATTTTCAGATATAATTCATTTCACATTTCTGCATTTTCAGCAATGCTTATGATTCATTTCAGCATCCACACGCAATTCCTGCAGGAAATAcattttctagttattcttTGGCGTCAAACTACACACGACAAAAATCTAATGAAAATCAAATTGGGCGGCTCATTGAGCAGATGGGGGCTATAATTTTTTGATATAAAAGTTTTTAAAATCATAGGAGTATAATAGAAGTCTATGAGCGGACTGATTTCTCAGTTCATACCTTATTAAACTCTGAAAGCCTGTTGCTCTAACATACATGCAGCTGGAATCCATTCGCGCTTTACAACGCACACGAGACTTTGACTTTCTATATTGTAATCTGTGTCGTGACAACTGTTACAGTTCCAAGCAATTTAACTGAAAAGCATTTTTAGTtgctgtttagtaattcatgtTACTAGCTGCTGGAGTGTGGAACGGGACTTTTCTAGACCAGAGAAACATTTTCTAAACTTCTCTCAGCTGCACAGTTTGAACCCTACACCCACAAACCCTCATCTCTCTCACCATGTAAATATCTAACCAACAGCGGGCGCTACACTTCTTAAGATCTAATCCCAGATAGATAGAGCCCTGTCCAGCTCTCACTCACTGCCatgttagtctcgctttgccagatcatccacacgctgcggagaggaggagggtctggttagtccacacagcattccaggatgggagaaaaacgtgctatggtttattggcatttctttaaaccaatcacaatcatcttgggcggtgctaaacttcgcacagagccgctgtaaaatagtcgtgcgagagaaaactcagattggacagatagtctagctagctgtctggatttacccaagggggtaagcgagtgtctggaacgcgtagctcctatggcgccattttgatgctaacaagagATTACCCgccattagcattccattgactgccattcattttgacgtcacttttcgctgtgatgtcacagcgaataactttacatctgaagcgtttaaagactctatttgtccattgttcatttctaaagaaacacgaaaatgtataaaaggctccattaccttgtacctcacgttatggctccgtagcagacgcttttgtaaaaataggctaacgattgtgtcataaccaagcgacttactgttgcatagtagaggaattaccgtatagtacaggagaagctcgcaggcagtttggacttacattagctgtttaggtttaattactgatgttaactagcattttagttagcaataattagcctgtgcccatgttatctccttacatatacctacactctctgtctctgtaagattgggaatgagtGAGATTtgtcttggcacagctaccagaagacttacaactttccgACACGTTGCttacgtcacatttacgtcgtctctctcagttggaggctgcgcagtaaagcaagagatcaacGGAAAAgggcttctaatatccttcactggtctccgtccagagcaacgggctctgttggtccattatatactgtctatggatttaccctgcagagatctgaggagcagctaaccatagtcctcatcgGCAAAAAGACatcatccggcggaatttcctgcagcaccggagcaatcccggaagtggaacgtcaaggatatagactactgctATGTAAACTAAACATGTTCAAGAATAAGTGACGTGAcgttgtaatgggaaaattacatttaagcctatttccttatatttttatgtttaatttgtactttacttctctcacaaatgctgaaagagttgatctcatttcccacatgcagattttgattctaactgctgagacgtccagtctggaacataatgtgagcactgtttgtctgaacagataggggctacaaggtcaccctaaaactatcgtacagggaggaggaggcgaaatggctccgagatgtctcttgtgttttttctgattgtcttcatgtgtatcagattgcctgtaagaactgtagtgtcataataatccaagtgcgtgtgtgctgtcactctgaaaatgcatataagcctagtgttctgttcactcatttgagaaactgactccacactggactgcggccttttgtgaaatcatgttgctcctatttgcaaatatatcttttaataaaatacaaaaacccaacttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160366 lncRNA downstream 121051 30316096 ~ 30319838 (-) True G119014
TU160363 lncRNA downstream 165542 30274707 ~ 30275347 (-) True G119012
TU160334 lncRNA downstream 220787 30219713 ~ 30220102 (-) True G118990
XR_005640761.1 lncRNA downstream 291260 30144044 ~ 30149629 (-) False LOC120568731
TU160451 lncRNA upstream 346806 30794967 ~ 30795784 (-) True G119073
XR_005640806.1 lncRNA upstream 416746 30864907 ~ 30876111 (-) False LOC120568929
TU160580 lncRNA upstream 729226 31177387 ~ 31197976 (-) True G119171
TU160579 lncRNA upstream 734681 31182842 ~ 31197976 (-) False G119171
TU160589 lncRNA upstream 736426 31184587 ~ 31237816 (-) True G119180
XM_039816749.1 mRNA downstream 2237 30319952 ~ 30438652 (-) False LOC120568974
XM_039816748.1 mRNA downstream 2237 30319952 ~ 30438652 (-) True LOC120568974
XM_039816750.1 mRNA downstream 2237 30354874 ~ 30438652 (-) False LOC120568974
XM_039814658.1 mRNA downstream 466600 29970090 ~ 29974289 (-) True LOC120567690
XM_039814654.1 mRNA downstream 750554 29685050 ~ 29690335 (-) True LOC120567685
XM_039816284.1 mRNA upstream 34427 30482588 ~ 30524862 (-) True LOC120568640
XM_039816281.1 mRNA upstream 38427 30486588 ~ 30524863 (-) False LOC120568640
XM_039816283.1 mRNA upstream 38427 30486588 ~ 30524847 (-) False LOC120568640
XM_039816282.1 mRNA upstream 38427 30486588 ~ 30524739 (-) False LOC120568640
XM_039816285.1 mRNA upstream 46881 30495042 ~ 30524862 (-) False LOC120568640
TU160248 other downstream 791097 29644363 ~ 29649792 (-) False LOC120567741
TU160179 other downstream 1020237 29420379 ~ 29420652 (-) True G118856
TU160079 other downstream 1454570 28986091 ~ 28986319 (-) True G118764
TU159738 other downstream 2722130 27717551 ~ 27718759 (-) True G118524
TU159739 other downstream 2726499 27713467 ~ 27714390 (-) False G118524
TU160542 other upstream 416085 30864246 ~ 30865494 (-) False LOC120568929
TU160545 other upstream 416085 30864246 ~ 30876080 (-) True LOC120568929
TU160586 other upstream 678269 31126430 ~ 31174951 (-) True G119177
TU160575 other upstream 721761 31169922 ~ 31171610 (-) True G119169
TU160576 other upstream 722221 31170382 ~ 31171610 (-) False G119169

Expression Profile