RNA id: XM_039816208.1


Basic Information

Item Value
RNA id XM_039816208.1
length 2619
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC120568595
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 30569095 ~ 30677352 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGCAGCTGCTTTTTCTCACCCGGGGCTACATAAACAACGACCAAGGCTCGACCGGGAAAGTAGCCCGAAAGCCCGAACGCAAACTGCTAGACGCGCTGTAACCAGGCTGTAACCCCGCTAAACAGACATCACGATCCATCATGAATTTCTTCCTGGAAACGATCAAAGTCCTCCTGCTGTCCATCTGGTACAATGTGGAATCTTTCATCCACATCTTTGTGCCcacgaagaagaagaacatcGCTGGTGAGGTGGTGCTGATCACGGGGTCAGGTAGCGGGATCGGCCGCCTCATGGCTCAGGAGTTTGCGGCTCGTGGCACTGTGCTGGTGTTGTGGGATATTAACCAGGACGGGATGAAGGAAACTGCTAGACTGGCTAAGCAGAGCGGAGCCAGCAGAGTCCACTACTATCTGTGTGACTGCAGCGACAAGAACGAGGTTTACAGAGTGGCTGACCAGGTAAAGCGAGAGGTGGGTGACGTCAGCATTCTGGTCAACAATGCTGGGATCGTGACAGGAAAGAAGTTCATGGATGCCCCCGATTCCCTGATTGAGAAGACGGTGGAGGTCAACACCATGGCTCACTTCTGGACCTACAAGGCCTTCCTTCCTGCCATGATTGCCAACAATCACGGCCATCTTGTCAGCATTGCTAGTTCTGCTGGACTCATAGGAGTCAATGGATTGGCAGACTACTGTGCCAGTAAGTTTGCAGCAGTAGGTTTCGCAGAGTCTGTGGGTCTGGAGCTGCTGGCAACTGGGAAAGATGGTGTCAAGACCACCATTGTGTGCCCGTACTTCATCAACACTGGAATGTTCAATGGGTGTCAAACTAAGTGGCCAAGACTGCTGCCAATCCTGGATCCAGACTATGTAGCCAAGAAGATCATCAATGCTGTGCTCACAGACCAGGTCTTCCTGCTGATGCCCAAGAGCATGTACCTCATCACTGCTCTCAAGAATGTCCTCCCCATGAAGCAGGGCATTTTGCTGGGCCAGTACCTGGGAGCCTTCAACCTCATGGACACATTCAGGGGACGCTCCACAAAACAGGAGTAAATGAAGAAAGAGAAGTTAAGGATGAGTAATATGGAAGGAGACATGCAAATATTAAAGCTGTCTACCTATTGTGTATTACTGTAATAAGACAAAACAGTAGTCGTGAAGGTTGGACTTGATTGCTCCTCTCATTTCAATGGTTCATGTATTCAAGCATTGAATGCCCGTTAGTCTCTTTATATCTCTCTGTTTTAATCCTTAATATCCTTAACGTACCTGTTTTTAAATGGCATGATCATTAGTACAATTTTAATTGTGATGTTATTAATAACCGTTTGTAATTGAATAGAATATAATGCTCATAATGGCCTCCTAAATTCAGCCAGCTAGTGTTGTTGCCTACTACTACTTGAGGACCAATCATGATGATGTAATGATGTATCATCAGTCCACAAACAGCCAAGTCAAACATTTTCCTATAATAACAGGGCTCAAAGTCAAATGCCATGTTTGATTTGAATGTCCGTTCTGTAAATTTGTAATATTGTGGTGTGGTTGGAGCCACAACTACAATTGCTTCAACACCGATGGAAACAATACAAAGTGGAAGAAGCATAAGTGTTGTTCGTCTGCTATTAAGAGAAGGATAAGTCCCATTCTTCTCATAAGTAAACCCATCAAATCAAATAACAGTGACAGTTTACTTATGCCAACTAACTGTAGACAGAGCTCATTATCTTTAGAATATCCAAAGCTCCAGCATTAATAAAAATGACGTATCAGTAGAAGCAGGTTCTAGGCCGTCGTCACCATAACAAAACCTTGTTCACTGTAAATGATGCTCGTCCATAATACACAGATGCATCAGAGACAAATCTAACTTGTACATCTATCAATTTATACTTCTTACTAAAGCTGGATATGTTTTGATTACAGTAAAAATGCTGACACTGCTTTATTCTGATATGTTAGCACTGTTGTGAATGGAGCCATAATAATCATCTCTAAAGGGTTTTGGGCACACTTTTGTTGTTAATCTGGCTCAGGGTTTTGCAGTCTAAATCAtttcccattaaaaaaaaaaaaagcaagtgcTCATACTCAGGAACAGTGACCCCTACTATGTGATACCTCACCTTGTAAACTTTGGACCACCTGAAGCTCTTGTGTGTTCAGACTGAACAAAAAGCTATTTTCTCCTCgtgttgagtttgttttttgaagtatttttttttttttgcaaaccgCAAATGTACGGACTGTTAAGACATAGCTGTAATTAGCTAGCACTGTAGCAGCGCGTACTAGCATGCTACAGCTAGCTGGAGTGTGAGAGGAGACCTCTACTTTTCTTCTTGGTTCCATATGTTGATGAAAGCCTCGAGATGAGCACAAAAATATGAAATCTAAACATCTTTATACTTGTGTGGTCTTAAGCACAAGAAGGCACGTCATCTTCAGTGAGTAAGGTGAACGTCGGCCCTTTATCCCTCGTTTCAGCTAGTTTACTCGATGGTTTCCTAGCAATGCTCCCAGCTGTGCTTTAACGTTCCAAAATGTTGTGGATGGAGGCATCATAGGGGGCTTGTATACAGTCTGTGCATGTCTCCTGTGGAT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K15734 SDR16C5; all-trans-retinol dehydrogenase (NAD+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160395 lncRNA upstream 106199 30452727 ~ 30462896 (+) False G119030
TU160393 lncRNA upstream 115958 30452127 ~ 30453137 (+) True G119030
TU160338 lncRNA upstream 305536 30263259 ~ 30263559 (+) True G118994
TU160307 lncRNA upstream 490885 30077818 ~ 30078210 (+) True G118965
TU160306 lncRNA upstream 491383 30077399 ~ 30077712 (+) True G118964
TU160442 lncRNA downstream 4729 30682081 ~ 30682321 (+) True G119064
TU160444 lncRNA downstream 15636 30692988 ~ 30693284 (+) True G119066
TU160449 lncRNA downstream 117890 30795242 ~ 30795503 (+) True G119071
TU160455 lncRNA downstream 173612 30850964 ~ 30895939 (+) True G119076
XR_005640809.1 lncRNA downstream 247414 30924766 ~ 30926283 (+) True LOC120568932
XM_039816413.1 mRNA upstream 350373 30101634 ~ 30218722 (+) True LOC120568730
XM_039817025.1 mRNA upstream 511986 30055815 ~ 30057109 (+) True LOC120569133
XM_039816946.1 mRNA upstream 522905 30044894 ~ 30046190 (+) True LOC120569089
XM_039816652.1 mRNA upstream 535561 30031910 ~ 30033534 (+) True LOC120568908
XM_039814657.1 mRNA upstream 599182 29963415 ~ 29969913 (+) True LOC120567689
XM_039814660.1 mRNA downstream 330370 31007722 ~ 31011324 (+) True LOC120567691
XM_039816757.1 mRNA downstream 754454 31431806 ~ 31453460 (+) True LOC120568980
XM_039816635.1 mRNA downstream 1183378 31860730 ~ 31865235 (+) True eif3f
XM_039814661.1 mRNA downstream 1189635 31866987 ~ 31869495 (+) False dnaaf6
XM_039814662.1 mRNA downstream 1211556 31888908 ~ 31914575 (+) False pip4p1a
TU160295 other upstream 599245 29968413 ~ 29969850 (+) False LOC120567689
TU159791 other upstream 2409506 28156973 ~ 28159589 (+) False LOC120568082
TU159680 other upstream 2959377 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 3683065 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 3799184 26765492 ~ 26769911 (+) True G118149
TU160502 other downstream 493865 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 521608 31198960 ~ 31200014 (+) False G119123
TU160672 other downstream 782512 31459864 ~ 31460908 (+) True G119257
TU160764 other downstream 1188403 31865755 ~ 31868793 (+) True dnaaf6
TU160769 other downstream 1211576 31888928 ~ 31912607 (+) False pip4p1a

Expression Profile