RNA id: TU160451



Basic Information


Item Value
RNA id TU160451
length 818
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G119073
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 30794967 ~ 30795784 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cagagatgggaagtaacgaagtacaaatacttcgttactgtacttaagtagatttttcggatatttctactttactttactatttttttttgtggcgactttttacttttactccttacattttaacacgaatatcggtactttctactctttacattttaaaaattggctcgttactttagttttgtacaagaggtcgtaatgtcggagaatagcgcggacacgcgccccCCCACCGCGAGCGGGCGCGGGCgccacagaaaaaagtgagaaaaaagaaagagagactgctgtccggaggataatcagttgagatggtgtgtgtgtgtccttgagaactgtaagtcgtataacttatgttgtcagttcatttaagcctgttgttgtattggtctatagttcttgcaaagttaaagtaggttagctagtgatttagttgtttgtgttcttcacctgttagctaggtttcacgttgcttgtaaagcatcaaaagagagaagttgtctctgtccgtgttttacagacacacctggggggggggggggaagtttgaaaccagcatcagctttaaatacggtcctaatctagtcctcactagcaagtttcaaataatttcactggagttaccgttattatttttcacgtgatcaataccgaattcaatctaattggatgggaatatactggtggtaacgttagcactagtagtatggacggcgacatgattgaaaatgaagaaaacagagatcccagagattaggcagacaagcagcaagacattcccaatcatccctggccttatctgagagagatgtttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU160405 lncRNA downstream 346806 30440889 ~ 30448161 (-) True LOC120568429
TU160366 lncRNA downstream 475129 30316096 ~ 30319838 (-) True G119014
TU160363 lncRNA downstream 519620 30274707 ~ 30275347 (-) True G119012
TU160334 lncRNA downstream 574865 30219713 ~ 30220102 (-) True G118990
XR_005640762.1 lncRNA downstream 645338 30144044 ~ 30149629 (-) False LOC120568731
XR_005640806.1 lncRNA upstream 69123 30864907 ~ 30876111 (-) False LOC120568929
TU160580 lncRNA upstream 381603 31177387 ~ 31197976 (-) True G119171
TU160579 lncRNA upstream 387058 31182842 ~ 31197976 (-) False G119171
TU160589 lncRNA upstream 388803 31184587 ~ 31237816 (-) True G119180
TU160593 lncRNA upstream 389207 31184991 ~ 31244376 (-) True G119184
XM_039814580.1 mRNA downstream 68887 30717405 ~ 30726080 (-) True LOC120567647
XM_039816281.1 mRNA downstream 270104 30486588 ~ 30524863 (-) False LOC120568640
XM_039816284.1 mRNA downstream 270105 30482588 ~ 30524862 (-) True LOC120568640
XM_039816285.1 mRNA downstream 270105 30495042 ~ 30524862 (-) False LOC120568640
XM_039816283.1 mRNA downstream 270120 30486588 ~ 30524847 (-) False LOC120568640
XM_039816681.1 mRNA upstream 244500 31040284 ~ 31155724 (-) False LOC120568925
XM_039816679.1 mRNA upstream 244500 31040284 ~ 31155723 (-) True LOC120568925
XM_039816680.1 mRNA upstream 253901 31049685 ~ 31155725 (-) False LOC120568925
XM_039816682.1 mRNA upstream 404757 31200541 ~ 31202192 (-) True LOC120568926
XM_039816425.1 mRNA upstream 659815 31455599 ~ 31457157 (-) True LOC120568745
TU160248 other downstream 1145175 29644363 ~ 29649792 (-) False LOC120567741
TU160179 other downstream 1374315 29420379 ~ 29420652 (-) True G118856
TU160079 other downstream 1808648 28986091 ~ 28986319 (-) True G118764
TU159738 other downstream 3076208 27717551 ~ 27718759 (-) True G118524
TU159739 other downstream 3080577 27713467 ~ 27714390 (-) False G118524
TU160542 other upstream 68462 30864246 ~ 30865494 (-) False LOC120568929
TU160545 other upstream 68462 30864246 ~ 30876080 (-) True LOC120568929
TU160586 other upstream 330646 31126430 ~ 31174951 (-) True G119177
TU160575 other upstream 374138 31169922 ~ 31171610 (-) True G119169
TU160576 other upstream 374598 31170382 ~ 31171610 (-) False G119169

Expression Profile