RNA id: TU160516


Basic Information

Item Value
RNA id TU160516
length 1023
RNA type TUCP
GC content 0.45
exon number 2
gene id G119123
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31198960 ~ 31235565 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggttgagcttccaaatgacaagatgtccatatcgttctccattggcttcaatgatcaaactcctagatatttcccagcgaaacactgaacgaaccactttttgaaatcgctgatatgaccacatttttacgtttatccatataaattttataccgatacgttcacaaaggccttgtgatgctcaggatcacgtcatttgactgatagcagttatggtgttgccacagtgaggctttgtttgggagctcgctctcagggactctgaatagctgcagcacagcacagctgacagattcagcaggtgacaggctcgttagcttgattacagacatcaaagcaagtaaacattcccaggccatggttaccatgacaacactttcacagacacacacccagatactacaggcagtaatatgaacagtagtctctttggccttccacttctgtccgtctgtcttctctgtctgtccatcctctttctgtcctctttcttctttcctctttctgtcttctttcctctttctgtcctctgttctctttctgtcctctcgctctcttttctctttcctctttctgtcctctgttctctttcctcttcctttcttctttcttctttctgtcctctttctgtcctttcttctttcctctttctgttctcttgctctctgttctctttcctctttctgtcctctttcttctttctttcctctttcctctttctgtcctctcgctccctgtcctctttcctctttctgtcctctttcttcttccctctttctgtcctctcgctccctgtcctctttcctctttcttcttccctctttctgtcctctttcttctttctgtcctctcgctccctgtcctctttcctctttctgtactctttcttccctctttattcttccctctgtcctctttcttctttctttcctctttcctctttctgtcctctcgctccttgtcttctttcctctttctgtcctctttcttcttccctctttctgtcctctcgctccctgtcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160514 lncRNA upstream 1621 31194131 ~ 31197339 (+) True G119122
XR_005640808.1 lncRNA upstream 113422 31084268 ~ 31085538 (+) True LOC120568931
XR_005640809.1 lncRNA upstream 272677 30924766 ~ 30926283 (+) True LOC120568932
TU160455 lncRNA upstream 303021 30850964 ~ 30895939 (+) True G119076
TU160449 lncRNA upstream 403457 30795242 ~ 30795503 (+) True G119071
TU160517 lncRNA downstream 7616 31207630 ~ 31235565 (+) True G119123
XR_005640807.1 lncRNA downstream 51772 31251786 ~ 31253673 (+) True LOC120568930
TU160634 lncRNA downstream 154216 31354230 ~ 31354583 (+) True G119219
TU160635 lncRNA downstream 154683 31354697 ~ 31354972 (+) True G119220
TU160636 lncRNA downstream 155593 31355607 ~ 31355871 (+) True G119221
XM_039814660.1 mRNA upstream 187636 31007722 ~ 31011324 (+) True LOC120567691
XM_039816208.1 mRNA upstream 521608 30569095 ~ 30677352 (+) True LOC120568595
XM_039816206.1 mRNA upstream 555322 30569095 ~ 30643638 (+) False LOC120568595
XM_039816207.1 mRNA upstream 555322 30569345 ~ 30643638 (+) False LOC120568595
XM_039816413.1 mRNA upstream 980238 30101634 ~ 30218722 (+) True LOC120568730
XM_039816757.1 mRNA downstream 231792 31431806 ~ 31453460 (+) True LOC120568980
XM_039816635.1 mRNA downstream 660716 31860730 ~ 31865235 (+) True eif3f
XM_039814661.1 mRNA downstream 666973 31866987 ~ 31869495 (+) False dnaaf6
XM_039814662.1 mRNA downstream 688894 31888908 ~ 31914575 (+) False pip4p1a
XM_039816640.1 mRNA downstream 729131 31929145 ~ 31939478 (+) True LOC120568893
TU160502 other upstream 2727 31171217 ~ 31196233 (+) True G119114
TU160411 other upstream 624079 30569395 ~ 30574881 (+) False LOC120568595
TU160295 other upstream 1229110 29968413 ~ 29969850 (+) False LOC120567689
TU159791 other upstream 3039371 28156973 ~ 28159589 (+) False LOC120568082
TU159680 other upstream 3589242 27602024 ~ 27609718 (+) False LOC120568838
TU160672 other downstream 259850 31459864 ~ 31460908 (+) True G119257
TU160764 other downstream 665741 31865755 ~ 31868793 (+) True dnaaf6
TU160769 other downstream 688914 31888928 ~ 31912607 (+) False pip4p1a
TU160818 other downstream 867598 32067612 ~ 32071300 (+) False LOC120567694
unassigned_transcript_563 other downstream 926343 32126357 ~ 32126430 (+) True trnar-ucu_14

Expression Profile