RNA id: TU160618


Basic Information

Item Value
RNA id TU160618
length 1310
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G119204
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31280322 ~ 31282095 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTCCTTTCTGtcatcttctttcctctttcttctttcctctttctgtcctctttcttctttctttcctctttcctctttctgtcctctcgctctctgttctctttcctctttctgtcctctttctgtcctctttcctctttctgatctctttcttctttcctctttctgtcttctgtcctctttcttctttcctctttctgtcctctcgctccctgtcctctttcctctttctgtcctctttcttcttccctctttctgtcctttttcttctttctgtcctctcgctccgtgtcctctttcctctttcttcttccctctttctgtcctctttcttctttctgtcctctttctttctgtcttctttcctctttctgttctctttcttctttcctttctgtcctctcgctctctgttgtctttcctttctgtcatcttctttcctctttcttctttcctctttctgtcctctttcttctttctttcttcttccctctttctgtcctttttcttctttctgtcctctcgctccgtgtcctctttcctctttcttcttccctctttctgtcctctttcttctttctgtcctctttctttctgtcttctttcctctttctgttctctttcttctttcctttctgtcctctcgctctctgttgtctttcctttctgtcatcttctttcctctttcttctttcctctttctgtcctctttcttctttctttcctctttcctctttctgtcctctcgctctctgttctctttcctctttctgtcctctttcttctttcctctttctgtcctctttcctctttctgatctctttcttctttcctctttctgtcttctgtcctctttcttctttcctctttcttctttctgtcctctttctactttcctctttctgtcctctttcttctttcctctttcttctttctgtcctctttcttctttcctctttctgtcctctttcctctttctgtcctctgttctctttctgtcctctcgctctcttttctctttcctctttctgtcctctgttctctttcctcttcctttcctcttcgttcctctctgtcctctttcttctttcttctttctgtcctctttctgtcctttcttctttcctctttctgttctcttgctctctgttctctttcctctttctgtcctctttcttccctctttattcttccctctgtcctctttcttctttctttcctctttcctctttctgtcctctcgctccctgtcctctttcttctttcttctttctgtcctctttctgtcctttcttctttcctctttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160593 lncRNA downstream 35946 31184991 ~ 31244376 (-) True G119184
TU160589 lncRNA downstream 42506 31184587 ~ 31237816 (-) True G119180
TU160582 lncRNA downstream 44910 31227107 ~ 31235412 (-) True G119173
TU160585 lncRNA downstream 77215 31202542 ~ 31203107 (-) True G119176
TU160580 lncRNA downstream 82346 31177387 ~ 31197976 (-) True G119171
TU160631 lncRNA upstream 67615 31349710 ~ 31349984 (-) True G119216
TU160646 lncRNA upstream 95245 31377340 ~ 31377550 (-) True G119231
TU160648 lncRNA upstream 101838 31383933 ~ 31384236 (-) True G119233
TU160651 lncRNA upstream 104614 31386709 ~ 31386914 (-) True G119236
XR_005640608.1 lncRNA upstream 120208 31402303 ~ 31405348 (-) True LOC120567738
XM_039816682.1 mRNA downstream 78130 31200541 ~ 31202192 (-) True LOC120568926
XM_039816680.1 mRNA downstream 124597 31049685 ~ 31155725 (-) False LOC120568925
XM_039816681.1 mRNA downstream 124598 31040284 ~ 31155724 (-) False LOC120568925
XM_039816679.1 mRNA downstream 124599 31040284 ~ 31155723 (-) True LOC120568925
XM_039814580.1 mRNA downstream 554242 30717405 ~ 30726080 (-) True LOC120567647
XM_039816425.1 mRNA upstream 173504 31455599 ~ 31457157 (-) True LOC120568745
XM_039815925.1 mRNA upstream 187500 31469595 ~ 31575193 (-) False zeb1a
XM_039815926.1 mRNA upstream 187500 31469595 ~ 31573690 (-) True zeb1a
XM_039816310.1 mRNA upstream 400105 31682200 ~ 31692546 (-) True LOC120568656
XM_039816309.1 mRNA upstream 414708 31696803 ~ 31710791 (-) False LOC120568655
TU160586 other downstream 105371 31126430 ~ 31174951 (-) True G119177
TU160575 other downstream 108712 31169922 ~ 31171610 (-) True G119169
TU160576 other downstream 108712 31170382 ~ 31171610 (-) False G119169
TU160545 other downstream 404242 30864246 ~ 30876080 (-) True LOC120568929
TU160542 other downstream 414828 30864246 ~ 30865494 (-) False LOC120568929
TU160692 other upstream 208157 31490252 ~ 31575190 (-) False zeb1a
TU160835 other upstream 765382 32047477 ~ 32051439 (-) True G119379
TU160944 other upstream 934407 32216502 ~ 32226360 (-) False G119465
TU160945 other upstream 936412 32218507 ~ 32226360 (-) True G119465
TU161095 other upstream 1480250 32762345 ~ 32765076 (-) False fcer1gl

Expression Profile