RNA id: TU160660



Basic Information


Item Value
RNA id TU160660
length 401
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G119245
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31407454 ~ 31407854 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ggtgcaaaggaccctagggtgaattactccgaaccatcactttaacaactGTCATAGAGTGAATGGGAACTAACCCCAGTTTCCTCACTGTCATTTCTTTTAGGGACAGACTACTACTATCTGGAACAAGCTTGGTTAAGTAGACCACTCTCCACTGTACAACACATCCAAATTTCATAGTCATAACTCAtgaaaagtgtttttattgtgaCCAGAAATCCTCCTTACATGTCAATAACCTAATTttaaaaactgacatttgtCACACTCATGACAGGGAACTCAGGGTTCCCCAGTGTCCTTGCTGCCATGGCAGTTACTTTACCAAATGGCGGTGGACACCAGGGGAACTTTGTGACACGGCAGTCAGGACACTGGGGAATCCAGAACTCAGTGTTGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005640608.1 lncRNA downstream 2106 31402303 ~ 31405348 (-) True LOC120567738
TU160651 lncRNA downstream 20540 31386709 ~ 31386914 (-) True G119236
TU160648 lncRNA downstream 23218 31383933 ~ 31384236 (-) True G119233
TU160646 lncRNA downstream 29904 31377340 ~ 31377550 (-) True G119231
TU160631 lncRNA downstream 57470 31349710 ~ 31349984 (-) True G119216
TU160661 lncRNA upstream 1067 31408921 ~ 31409177 (-) True G119246
TU160664 lncRNA upstream 8885 31416739 ~ 31416989 (-) True G119249
TU160676 lncRNA upstream 46625 31454479 ~ 31454958 (-) True G119259
TU160677 lncRNA upstream 47199 31455053 ~ 31455397 (-) True G119260
TU160678 lncRNA upstream 49039 31456893 ~ 31457154 (-) False LOC120568745
XM_039816682.1 mRNA downstream 205262 31200541 ~ 31202192 (-) True LOC120568926
XM_039816680.1 mRNA downstream 251729 31049685 ~ 31155725 (-) False LOC120568925
XM_039816681.1 mRNA downstream 251730 31040284 ~ 31155724 (-) False LOC120568925
XM_039816679.1 mRNA downstream 251731 31040284 ~ 31155723 (-) True LOC120568925
XM_039814580.1 mRNA downstream 681374 30717405 ~ 30726080 (-) True LOC120567647
XM_039816425.1 mRNA upstream 47745 31455599 ~ 31457157 (-) True LOC120568745
XM_039815925.1 mRNA upstream 61741 31469595 ~ 31575193 (-) False zeb1a
XM_039815926.1 mRNA upstream 61741 31469595 ~ 31573690 (-) True zeb1a
XM_039816310.1 mRNA upstream 274346 31682200 ~ 31692546 (-) True LOC120568656
XM_039816309.1 mRNA upstream 288949 31696803 ~ 31710791 (-) False LOC120568655
TU160586 other downstream 232503 31126430 ~ 31174951 (-) True G119177
TU160575 other downstream 235844 31169922 ~ 31171610 (-) True G119169
TU160576 other downstream 235844 31170382 ~ 31171610 (-) False G119169
TU160545 other downstream 531374 30864246 ~ 30876080 (-) True LOC120568929
TU160542 other downstream 541960 30864246 ~ 30865494 (-) False LOC120568929
TU160692 other upstream 82398 31490252 ~ 31575190 (-) False zeb1a
TU160835 other upstream 639623 32047477 ~ 32051439 (-) True G119379
TU160944 other upstream 808648 32216502 ~ 32226360 (-) False G119465
TU160945 other upstream 810653 32218507 ~ 32226360 (-) True G119465
TU161095 other upstream 1354491 32762345 ~ 32765076 (-) False fcer1gl

Expression Profile