RNA id: XM_039815926.1


Basic Information

Item Value
RNA id XM_039815926.1
length 5867
RNA type mRNA
GC content 0.49
exon number 8
gene id zeb1a
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31469595 ~ 31575193 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAATGTGTGTGAGCCGAGGGGCCGGAaagcaccttttttttctcctgctgACGACACGACGGTGACTGTGCGTCCGTACAGGagccatcatcatcaccaccaccaccatcatcatcatgttTACCTGAACGCGGATAACGGGGCTGACAAATGGCCtagaaataaacagaaataacacCTGCGGCTCGCGACCGTTCACAGAACAGGATCTGCTCGCCGTTTCCTAAAGGCTCTGTGTCTCGTGAGGAGCCAGGGAAAACCGCTCCAAATGTCAACTTGTGCAGTGACAGACTTCAACAATGGCTTGGAGGCCAGTTCCGACTCAGATGACGAGGACAAGCTACACATTGTGGAGGAGGACAGCCTGCAGGAGCCGGAGGTCGCCAACGCCGATGGGACCAAAACGCAAGACAGCCATGGCGCCACGACAAGCCCAGTATTACCACACAACGGTTCCTTAAACGGAGtgaagGAGGAGTATgtgtcagaagaagaagaggaggctgAGAAGGAACCTCTAGTGGAGGAGATCCTCCAGCAGGGAGACACAGCCGTCATCTATCCTGAAGCCCCTGAGGATGAGCAGAGTCCAGCAGAGACAGGAGGCGCTGATGAAAACGGCACACCAGATTCCTTCTCCCAGTTGCACACCTGCCCGTACTGCTCGCGGGGCTACAAGCGCAACGCCTCGCTGAAGGAGCACATCAAGTATCGCCACGAGACCAGCGAGGACAACTACAGCTGCTCGCACTGCAGCTACACATTCACGTACCGCTCGCAGCTGGAGAGGCACATGAGCCACCACAGGGGCACCAGGGAGCAGCGTCACGTTACCCACAGGCCGACAGGTGGATCAGAAGGAAAAGGTGGAACCCGCAAGTTCATGTGTACCGAATGTTCCAAGGCCTTCAAATACAAGCACCACCTGAAGGAGCACCTGCGTATTCACAGTGGTGAGAAACCATATGAATGCTCAAACTGCAAGAAGCGATTCTCCCACTCAGGCTCCTACAGCTCCCACATCAGCAGTAAGAAGTGTGCAGCAACCCCCAATGGCGTCCCTCGATTGCCAATCAAATCTCCCCCACCCACCACTCAGACCACACCGGTCGTAATTGCTCCAGCCCGCATGATTCTCAAAGAGAAGACTGACAGCAAGCCCCTCCAGGAGCAGCTCCCCATCACCCAGATCAAATCTGAACCTGTGGAATACGAGTGCAAGGCCATGATGGCGGCACCGGCAACTTCAGCTGGTACCAACGGAGTGGTGAATGGAGGGACTGCACAGCCAGCTGTGGTTCCAGCTGCAACCTTGCCTCAGGGCGTGGCTATGGTGGTGCCAGCCGTCGGCCTCATGTCGCCCATCAGCATCCAGTTGAACGACTTGCAGAATGTGCTCAAAGTGGCGATGGATGGAAACGTGCTCAGACAGGTGCTGGGCACAGCTAACGGGGTGGTGACACAGGGAAAGCAGGGAATCGTAGTTCAGCAGCCCCAGCAGCAGATCATCAGCCTGCCGGCCTTTGTGGATCATGACGGCACCACGAAGATCATCATCAACTACAGCATCAGCCCCGCAGCCGCTACCACTGCCACAGGCCAGCCTGCACCGCTCGTTGCCAAAACCAATCCTGCTCCCCCTCCCACTGTCACCACTGCTGCAGCCCCAACCCCCACCAAGACAGACAGACCCTCGACCCCAGAGGTGGCCGACCTCTCCATTGTAAAGGCCGAGCCCGAATCGGTAGCCATCCCAgacatggagacagaggcaGCCACGCAGACAGAAATGGAACCTGTCAAGACTTCATACACCCAAATAGCGCACATGCCAAAAGTCAACAGCTCCAGTTCGTGTTTACTCTGCGATGACTGTCCCGACAACCTGGAGGCGCTACACCTCCTCCAGCACCGCAAAGCAGCCAATGGGGAGGCCGTTGACTCGGCCGCGTTGGACCCCTCATTCGCCGCTCTGCTCAGCGAGGCAGGGGTGACGCTGGAGGAGCCGCCTGTGGACGACCTGCTCTCACTCCTCAAGACCTACTTTGCCTCCAATGCCAAACCCAGCGAAAAGGAGCTGTCCAAGATATCGGAGTCTGTCAGGATTCCCGTGGATGTGGTCAGAAAGTGGTTTGCCAAGATGAACTCTGGGAAAAACGTGGGCAAATATCGCAGTGGCGCTACAGCAGTTTCCAAAAAGACTGAAACCTCGAGTCTCAGCTCGGAGGAAGCCTCGAATCATAATGGTGAGGCAGAGGAGGACAGCTCCCAAGAAACCTCCAACAAAGCCTCATCCGAATCTGGCAGCACGTCTCCATCAGATTCCTCACCACTAAGCCTCAATGCCGGGGACCTCGTCATCGTTAAGAGCGAGCCAGAAGACCCTGACGCCCAGGACTCCCAGGCCGAGCCGCTCGACCTCTCCCTCCCTAAACACATCGCAGCAGCACTGGAGATGGCCCAGCCCCCCGCCAAGCAGCAGGAGCACCCCCTGAACCTGACCTGCCTGAGGAAGGAGCAGCTAGACGGGCGAACCTTCTACGTCAACAAGACCGGAGGGCCCGTCAACATCGTCACTACCACACAGCTGCCCACGTTAGTGGCCATCGGTGGTCAGGGCGCGGTGAGCTGTCTCAGCGCCATCAACACCACGACCAAACGCACCATCCTCATCCCCCAGCTCACCTACACCTATGCCACTACAGCCGGCAGCGCCACCGGAGCAAAGACTGTCGTACTGAACGGCCACACGCAGGGAAAGAGGCTGGAGAGCAGCTCTGACACCGTCTCCACGGTGGAGGAGCAGAACGACTCGGACTCAGCCGCGCTGATGAAGAAGCGGCGGCTGGAAAACGGCGTCTACCCATGTGACCTTTGCTCCAAAGTCTTCCAGAAGGGCAGCTCCCTGCTTAGGCACAAATATGAACACACAGGAAAGCGGCCCCACGAGTGCAGCATCTGCAAGAAAGccttcaaacacaaacaccaccTGATCGAGCACTCGCGGCTGCACTCCGGTGAAAAACCCTACCAGTGCGATAAGTGCGGCAAGCGTTTCTCCCACTCGGGCTCATACTCCCAGCACATGAACCACCGCTACTCCTACTGCAAGAAGGACGGGCCAAGCTCCGGCTCGGGGCCACGTGAGGTTCAGTCGGAGCTCGGCAGCCCCCTCGGCGCTGGGCCGCAGTCGGACAGCCGGACCACGACCCCTCCCTCCCAAATGGACTCAGACGAGAGGGAGAGCGAGGATGAGGACGACGAGGCCATGTGCATGGACGACATCCGGGTGGTGCAGGTGGACGACGGCGAGTGCGAGATATACGAGGGCAACTTTGAGGAGGACGAGGACGGCGAGGAGATGGCGGAGGAAGACACGGCCGGAGAGGAAGAGGCAGACGGAGACAAGGTGGACAACGAGTTTGTTTGTGACGTGGTGGAGGTCGAGCTTGAGGACGGTCACGTGGAGGACAAAGAGACGGAGGAAATGActgaagagaaggaggaagcGGCAAGCACGGATACAGAGGAACTGGCAGACTGTGAAGCAAATACGGACAAAAGCATCAGGGAGGGCTCAGACAGCGTTAAATTCACAGAGGAAGTGGTGACAAACGCCAAATAAAATGATGGAAAATCTCTTCGGGACAGCTCAAAATGCCTCGGTTATGACATTTCAAGTTAATTCAGACAAAGCCGCAGAAAAGTCAAGAAAGTCACGGCGGTTGCCTGATCTTAACGGTCCACTACTGTGTACAAAAACCCAGGTGTGCctgaacttgaaaaaaaaaaaaaaaaaaagtgacttttttttcttgtggaAATGAAATATCAGTGTTAAAATTGTTTATAGAAGTCCAGATTTTAAAGCAGAATTCACCCATCAACGTGTTAGACTTGTTACTGAGACATACcaggttgtttttgtttgtttgtctgttttcatTTAGTCAGTGTTACTAATcttgtttgaaaacattttaacctGTAAAGATGAGAGATTTCTATACCTTTTTATTGCCAATGAAGTTTCCTAAATCAGTATTTTATTGAGTTCTACGAACAAAAACCTCTGCACTACAGTATTCCTGGTTTACCTATGGATACATGCCTCATGCATCGTATGCCCTTCAGTGTTATATACGCTAGATAGATACACTAGCTAGCAAGATGTTGTTTGTGTTAGTGTTGGCTAGTTAGCATTACTTTagttttcagtttgactgttagcCTTAAGGAAAACAAAGTATTCTTGGGGAGGATTGTGGGCGGGATGGGGAGACGTTGGCTTCTGTACGCCATAACCAAATTTGCCCTATCAGGGAAGGTGGAGTCACAACCTTAAAGCCAGCATCAGGGGTCTGTGTTTTCGCAATCCAGGTGAAGATTGAAATGCAGGGTCCGCCTCGCCTGGCTTCGTTGTGGTTAGGGAAACGCACGCGCCAATAAGAACCGAGCTTCTCTTTATTTTGGTTGACTTTAAAGTTTCAGTGTTATTAGCTTGTAAATTAAGTCATACTGTACGTGAAGGACCAGGGCTGTTCCCTGCTCCACCCCAAATGCCTCCAGCCTTATGCAAGACCTGTGTGCTGTTAAAAGTGCCATTGAACAGTGTTATAATTTCTTCTTTACACATGTAGCCAGTATTATGTCCCTCTGTTACCTACACAAGACCCATATTGACTAATGTTTGTTGACTTGCACAGAACAGCTCATTTGTTTCAATAGCTGAAATATGCATCCTGTgaaatttatttaaatatttgcaaGGCCTAGAAAAGTATTTGGACCACTTGTCTTCAACTATCGAGTTTGGTCATTGATTTTATGTTGGACTTCATGTCACAAgtcagtttaaaaaatgtttacataAGTGTTTAAAAACAGAAAGTGTTCCGTTTTCTGCAGATTGAAATATTTGAAGCTTAAGACACTCTGCTTCACCTGCTTGGCTcggaaagaaatacaaaaaataaacaaaaccaaGATGAATTTGATGTAAAATGGAGACAGAAGGATTTACTGTAAAGTAAAAAATTCAGCCAAACTTGTGCACTTGTTTCGgatagtaaaaaagaaaagaaaaagctgtCTCGCACTTCAGGTAACAAACGTTAGTGAATGTGGTCTCTGTCGATGTGTTTTCAGTTGGTTTTACCGAACAGTGTTTATAAAATTAGtctgttttaattttcttttatgttttatgttttcgaCAATGGCAGTATTAGAACCCTTTTCAcagattaaaaaacaatttacctGTTTAGTTTTTAGAagacttttttatatttatgtgtcttatttttatattttcttttatggTTATTTATTACACATTGTAACGTACATTACTGTAGTTTGAATTGatacaataatatattttaGTATGAAAAATAACCTTAAGACGAACAAAAAACCCCAACATGTGGTTCTGGGAGCTGAAGtttgttttaacaaaaaaaaaaaaaactaaaaagataaAACGTGTATTCTGTAAACATGACTTCtgttaagctaaaaaaaaaagacaggaatGAAGTGAGAAATAGAAACTTGTTACATGTGCATCCGCTCTTTTGCGTCGTTATGAAGCTACTGAATTCTAAAACTCTGTGATTTTAAAAGCATGAGTCGCGTTTTAATGAAGGATTTTTATGAAGCCTCCCTTTTGATTTCGAAGCCAAATTCCGATGGTCCTGCCACCCTGTTTTCTGTTCTGTGCCAACTTCCATTGTACTGTCGAAGGCTGCATATCACATTATTCTGTCCTCACCCTTTGTAAATCCACTgtctttttgtattgtttttattttagttttgctTCATTTTTATGACTCCCCATCACAATAAAATATAAGAAAGCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K23560 ZEB2; zinc finger homeobox protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160678 lncRNA downstream 12441 31456893 ~ 31457154 (-) False LOC120568745
TU160677 lncRNA downstream 14198 31455053 ~ 31455397 (-) True G119260
TU160676 lncRNA downstream 14637 31454479 ~ 31454958 (-) True G119259
TU160664 lncRNA downstream 52606 31416739 ~ 31416989 (-) True G119249
TU160661 lncRNA downstream 60418 31408921 ~ 31409177 (-) True G119246
TU160702 lncRNA upstream 40326 31614016 ~ 31614324 (-) True G119284
XR_005640619.1 lncRNA upstream 86925 31660615 ~ 31663824 (-) True LOC120567841
TU160792 lncRNA upstream 275748 31849438 ~ 31915814 (-) False G119347
TU160786 lncRNA upstream 338988 31912678 ~ 31915608 (-) True G119347
TU160790 lncRNA upstream 338988 31912678 ~ 31915608 (-) False G119347
XM_039816425.1 mRNA downstream 12438 31455599 ~ 31457157 (-) True LOC120568745
XM_039816682.1 mRNA downstream 267403 31200541 ~ 31202192 (-) True LOC120568926
XM_039816680.1 mRNA downstream 313870 31049685 ~ 31155725 (-) False LOC120568925
XM_039816681.1 mRNA downstream 313871 31040284 ~ 31155724 (-) False LOC120568925
XM_039816310.1 mRNA upstream 108510 31682200 ~ 31692546 (-) True LOC120568656
XM_039816309.1 mRNA upstream 123113 31696803 ~ 31710791 (-) False LOC120568655
XM_039816308.1 mRNA upstream 123113 31696803 ~ 31710791 (-) True LOC120568655
XM_039815236.1 mRNA upstream 140597 31714287 ~ 31799338 (-) True LOC120568044
XM_039815230.1 mRNA upstream 140597 31714287 ~ 31786187 (-) False LOC120568044
TU160586 other downstream 294644 31126430 ~ 31174951 (-) True G119177
TU160575 other downstream 297985 31169922 ~ 31171610 (-) True G119169
TU160576 other downstream 297985 31170382 ~ 31171610 (-) False G119169
TU160545 other downstream 593515 30864246 ~ 30876080 (-) True LOC120568929
TU160542 other downstream 604101 30864246 ~ 30865494 (-) False LOC120568929
TU160835 other upstream 473787 32047477 ~ 32051439 (-) True G119379
TU160944 other upstream 642812 32216502 ~ 32226360 (-) False G119465
TU160945 other upstream 644817 32218507 ~ 32226360 (-) True G119465
TU161095 other upstream 1188655 32762345 ~ 32765076 (-) False fcer1gl
TU161097 other upstream 1188655 32762345 ~ 32765076 (-) False fcer1gl

Expression Profile