RNA id: TU160703


Basic Information

Item Value
RNA id TU160703
length 605
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G119285
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31641354 ~ 31643198 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgtaaccaagtttatatatccccgcgccgtttatagctttattataagtatatgtcaacaatgtgcacagaatggtcgacgcactttcacctgcacccgtcaggaaacgggagaaagctttgaagtgggacgtatgaagttatgtccacaactacgagggtgtgactgaagtacccctgttgagctgcatcacagctgcactatgtgcatggacctgtgccagtcagcacattactcacctgtgtgcagaggacaggcagcagtagcacaaaccaagaagggtgcacaaccaggcctgggagagaaaattactgatgtccacaaaaccaaatcagagaaggagcatactatacaaagacaacagtggagagttcctggatcggtctgtcctcaaagtgccagagatctacaaggacttcacccttttctgcaccatcagcgtataatcaaagtgataaaagagagaacaaattattgttttctctgttgacatgaataggtgcctgtaatgtctgcccatatattcaatcaattcaataaatgttgataagtatcactgatatttcttaaatcattgtagtttttcagagcaataagatacaga

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko00680 Methane metabolism
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640768.1 lncRNA upstream 30593 31608971 ~ 31610761 (+) True LOC120568739
TU160684 lncRNA upstream 151518 31477086 ~ 31489836 (+) True G119266
TU160682 lncRNA upstream 165507 31475565 ~ 31475847 (+) True G119265
TU160681 lncRNA upstream 168836 31469594 ~ 31472518 (+) True G119264
TU160670 lncRNA upstream 186937 31453788 ~ 31454417 (+) True G119255
TU160729 lncRNA downstream 86947 31730145 ~ 31731290 (+) True G119306
TU160753 lncRNA downstream 195184 31838382 ~ 31842971 (+) True G119328
TU160760 lncRNA downstream 206242 31849440 ~ 31915601 (+) True G119332
TU160757 lncRNA downstream 269480 31912678 ~ 31914704 (+) True pip4p1a
XR_005640633.1 lncRNA downstream 412857 32056055 ~ 32059373 (+) True LOC120567918
XM_039816757.1 mRNA upstream 187894 31431806 ~ 31453460 (+) True LOC120568980
XM_039814660.1 mRNA upstream 630030 31007722 ~ 31011324 (+) True LOC120567691
XM_039816208.1 mRNA upstream 964002 30569095 ~ 30677352 (+) True LOC120568595
XM_039816635.1 mRNA downstream 217532 31860730 ~ 31865235 (+) True eif3f
XM_039814661.1 mRNA downstream 223789 31866987 ~ 31869495 (+) False dnaaf6
XM_039814662.1 mRNA downstream 245710 31888908 ~ 31914575 (+) False pip4p1a
XM_039816640.1 mRNA downstream 285947 31929145 ~ 31939478 (+) True LOC120568893
XM_039816638.1 mRNA downstream 299005 31942203 ~ 32016352 (+) True lig1
TU160672 other upstream 180446 31459864 ~ 31460908 (+) True G119257
TU160516 other upstream 441340 31198960 ~ 31200014 (+) False G119123
TU160502 other upstream 445121 31171217 ~ 31196233 (+) True G119114
TU160411 other upstream 1066473 30569395 ~ 30574881 (+) False LOC120568595
TU160295 other upstream 1671504 29968413 ~ 29969850 (+) False LOC120567689
TU160764 other downstream 222557 31865755 ~ 31868793 (+) True dnaaf6
TU160769 other downstream 245730 31888928 ~ 31912607 (+) False pip4p1a
TU160818 other downstream 424414 32067612 ~ 32071300 (+) False LOC120567694
unassigned_transcript_563 other downstream 483159 32126357 ~ 32126430 (+) True trnar-ucu_14
TU160865 other downstream 545782 32188980 ~ 32226483 (+) True cadm3

Expression Profile