RNA id: TU160760


Basic Information

Item Value
RNA id TU160760
length 540
lncRNA type read_through
GC content 0.38
exon number 3
gene id G119332
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31849440 ~ 31915601 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgcacacacacacacacacacacacacacacacacacacacacacacacacacaaccttatacAATAGTAAGAAACACTGCATACACAAAGTAAGATGAGAAGAAGCTACCACGTAGACTGAGGTCGCAAACCGTTCATATGTACCGTTCTATACGCTGCAAAAAGGCCACAAATAAGTCATTTATCCAGTCCTAAAATCATATTTATTGTGGAAAAGTCTGTTATGGAGTGAGATTATTTCACTTTCTTTTAAGACTGTACCAAGGACGTGTTTCCTTTTTGAAATCAATACAATGATCTGCCAGTTTCAAGTTATGGTCAGAGCATTACTTTTTAAGActgtgatgggggggggggggaaataagGTTGAAGGACAGAATTAATATGACTTGTTTAAGGAagacctttttctttttagcaGTGGAGTGATCATGTTTTATCCATGACTGCAAAAGAAATCAATCATGTTAATGCCAATAATCAAGAACCTGGCTGATGCTCTTTTCAGAGTTTGTTTACACACAAATAAAGACATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160753 lncRNA upstream 6469 31838382 ~ 31842971 (+) True G119328
TU160729 lncRNA upstream 118150 31730145 ~ 31731290 (+) True G119306
TU160703 lncRNA upstream 206242 31641354 ~ 31643198 (+) True G119285
XR_005640768.1 lncRNA upstream 238679 31608971 ~ 31610761 (+) True LOC120568739
TU160684 lncRNA upstream 359604 31477086 ~ 31489836 (+) True G119266
XR_005640633.1 lncRNA downstream 140454 32056055 ~ 32059373 (+) True LOC120567918
TU160858 lncRNA downstream 208963 32124564 ~ 32124915 (+) True G119398
TU160878 lncRNA downstream 425524 32341125 ~ 32341363 (+) True G119409
TU160886 lncRNA downstream 432520 32348121 ~ 32349713 (+) True G119415
TU160887 lncRNA downstream 448965 32364566 ~ 32364768 (+) True G119416
XM_039816757.1 mRNA upstream 395980 31431806 ~ 31453460 (+) True LOC120568980
XM_039814660.1 mRNA upstream 838116 31007722 ~ 31011324 (+) True LOC120567691
XM_039816208.1 mRNA upstream 1172088 30569095 ~ 30677352 (+) True LOC120568595
XM_039816640.1 mRNA downstream 13544 31929145 ~ 31939478 (+) True LOC120568893
XM_039816638.1 mRNA downstream 26602 31942203 ~ 32016352 (+) True lig1
XM_039816639.1 mRNA downstream 26602 31942203 ~ 32016352 (+) False lig1
XM_039816189.1 mRNA downstream 116051 32031652 ~ 32051433 (+) True mpz
XM_039816190.1 mRNA downstream 116051 32031652 ~ 32047643 (+) False mpz
TU160672 other upstream 388532 31459864 ~ 31460908 (+) True G119257
TU160516 other upstream 649426 31198960 ~ 31200014 (+) False G119123
TU160502 other upstream 653207 31171217 ~ 31196233 (+) True G119114
TU160411 other upstream 1274559 30569395 ~ 30574881 (+) False LOC120568595
TU160295 other upstream 1879590 29968413 ~ 29969850 (+) False LOC120567689
TU160818 other downstream 152011 32067612 ~ 32071300 (+) False LOC120567694
unassigned_transcript_563 other downstream 210756 32126357 ~ 32126430 (+) True trnar-ucu_14
TU160865 other downstream 273379 32188980 ~ 32226483 (+) True cadm3
TU160866 other downstream 273471 32189072 ~ 32226483 (+) False cadm3
XR_005640735.1 other downstream 537104 32452705 ~ 32455106 (+) False LOC120568569

Expression Profile