RNA id: TU160792



Basic Information


Item Value
RNA id TU160792
length 777
lncRNA type read_through
GC content 0.36
exon number 3
gene id G119347
representative False

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31849438 ~ 31915814 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CAGGTAGGTTTAATTCAAAACACTGCATCATAAAAGTTagtttttaaacattatttgaGGTACCGCTACTTTAAGCCTAAATTGGACCAgcttttttcaaataaataaaatggaacaaAGTCAAATAAACTGAGATTAGTGGCATTATCTTcaataaaacatcaaataaattgtgtgggtaaataaaaaaaactcacattagctgttttgtACATTATGTCTTTATTTGTGTGTAAACAAACTCTGAAAAGAGCATCAGCCAGGTTCTTGATTATTGGCATTAACATGATTGATTTCTTTTGCAGTCATGGATAAAACATGATCACTCCACtgctaaaaagaaaaaggtctTCCTTAAACAAGTCATATTAATTCTGTCCTTCAACcttatttcccccccccccccatcacagTCTTAAAAAGTAATGCTCTGACCATAACTTGAAACTGGCAGATCATTGTATTGATTTCAAAAAGGAAACACGTCCTTGGTACAGTCTTAAAAGAAAGTGAAATAATCTCACTCCATAACAGACTTTTCCACAATAAATATGATTTTAGGACTGGATAAATGACTTATTTGTGGCCTTTTTGCAGCGTATAGAACGGTACATATGAACGGTTTGCGACCTCAGTCTACGTGGTAGCTTCTTCTCATCTTACTTTGTGTATGCAGTGTTTCTTACTATTgtataaggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005640619.1 lncRNA downstream 185614 31660615 ~ 31663824 (-) True LOC120567841
TU160702 lncRNA downstream 235114 31614016 ~ 31614324 (-) True G119284
TU160691 lncRNA downstream 378279 31469613 ~ 31471159 (-) False zeb1a
TU160678 lncRNA downstream 392284 31456893 ~ 31457154 (-) False LOC120568745
TU160677 lncRNA downstream 394041 31455053 ~ 31455397 (-) True G119260
TU160804 lncRNA upstream 840 31916654 ~ 31917970 (-) True G119357
TU160805 lncRNA upstream 2225 31918039 ~ 31919127 (-) True G119358
TU160823 lncRNA upstream 33645 31949459 ~ 31966226 (-) True G119368
TU160853 lncRNA upstream 189530 32105344 ~ 32110517 (-) True G119394
TU160933 lncRNA upstream 207525 32123339 ~ 32124490 (-) True G119455
XM_039816983.1 mRNA downstream 28014 31802504 ~ 31821424 (-) False LOC120569109
XM_039816984.1 mRNA downstream 34334 31802504 ~ 31815104 (-) True LOC120569109
XM_039815236.1 mRNA downstream 50100 31714287 ~ 31799338 (-) True LOC120568044
XM_039815230.1 mRNA downstream 63251 31714287 ~ 31786187 (-) False LOC120568044
XM_039815234.1 mRNA downstream 63251 31714287 ~ 31786187 (-) False LOC120568044
XM_039816160.1 mRNA upstream 448905 32364719 ~ 32374518 (-) True LOC120568568
XM_039816157.1 mRNA upstream 573003 32488817 ~ 32513979 (-) False LOC120568565
XM_039816155.1 mRNA upstream 573003 32488817 ~ 32513978 (-) False LOC120568565
XM_039816153.1 mRNA upstream 573003 32488817 ~ 32513978 (-) True LOC120568565
XM_039816154.1 mRNA upstream 573003 32488817 ~ 32500101 (-) False LOC120568565
TU160692 other downstream 274248 31490252 ~ 31575190 (-) False zeb1a
TU160586 other downstream 674487 31126430 ~ 31174951 (-) True G119177
TU160575 other downstream 677828 31169922 ~ 31171610 (-) True G119169
TU160576 other downstream 677828 31170382 ~ 31171610 (-) False G119169
TU160545 other downstream 973358 30864246 ~ 30876080 (-) True LOC120568929
TU160835 other upstream 131663 32047477 ~ 32051439 (-) True G119379
TU160944 other upstream 300688 32216502 ~ 32226360 (-) False G119465
TU160945 other upstream 302693 32218507 ~ 32226360 (-) True G119465
TU161095 other upstream 846531 32762345 ~ 32765076 (-) False fcer1gl
TU161097 other upstream 846531 32762345 ~ 32765076 (-) False fcer1gl

Expression Profile