RNA id: TU160804


Basic Information

Item Value
RNA id TU160804
length 1317
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G119357
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31916654 ~ 31917970 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTTGCAAATGAAATAAGAATGGGAGAAGTACAAGATGTCATAGAAGGagccaaaaacaacaacaaattatgCTGGCACTTATATGATAAAGGAAGGAAAGGGAGATTTTGAGGGGAATTGCTGTATATGTTAACGCAAAGACCacgtttgtttctttgtttctatGTAAGTTATGTGCATGTTGTATGAGAAAATGTGTGCATCAATGACGAAAGGAATAACAAAGAAATAGCTAAGTaggtaataaataaattgagGGTGAagtaataaagaaaaatatttattaaaaacataatgtAATTGCAGCATTTTTGCCCGGCTGTGATTTAACCTAATATTTTGTCACATATTAGTGTAGGCTGTGATTTCTCTTAATACCATGTTCTCTCTGAATTATGGCATCAGAAacacatataaaacacaaagagCTTTGTCACATGTGGATGATGCAAAAGCCATTACCGTTCAAACACTGGATTTGTTGTATTGCTGCATTTTCAAAGGCCCGAGTCATGCTGTTGGAAGAATTATTCTcattaaaaacagtttttttttctaaagattGGGTTAGCCAATAGCAATACAAAATGTTCCTCATCTGTGAAGTGATGTGCAAAAAGCATGGCAGTTTTATATTGcagtacacacatacatttggTGGTGATATAATGTAAGACGGGCACAAATAAGAAGATTTACAGCAAATTCGATTTCCTTTCTCCTTCCCGCCTGACACTATCTTATGACTCCCACATCAGCTGAATTGTCACTAAAGTAACTCACCAGGGAGAACTATCAAGATGGAAGAGAGAACAAAAGTGGAgagcagagacagaaacagaaacattccCTGAAGAGGTAAAGCGGTATGATATCATGAATGAAAAATTAAGTCAATAAAATGGACCTGAGGCACTTTGAGTAGCAATGTGTCCATGTGAGAGAGtggctgagtgtgtgttttctgtgtttcagaataaaagaaagCTAATGCCCTCTCACTTAAAACCAGAAGGTTATGGGACCAATTGTCTTCCTCACTTCCTagggctttttttgttttcccccTCCACTTTCTGGtctctcagcctccctggtttGTGCTGCTCTCAGGGGAGCTGTGGTTTCTGAAAGGTTTCTCAATGTCCTTAATCCCTCAATCTCTTTGTGTCCAGGCAAAAAATATATCCGCATGAAACTCAAGAGGCCGACAGGGGCCAAGTCgtgtgagaaaaaaagatgagCTTTCTTTCCAACATTTTGTGGGAATAGGAGAAAGAAGCTCTTTTTACTTTGTAATTAAAGCTAAACAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160792 lncRNA downstream 840 31849438 ~ 31915814 (-) False G119347
TU160786 lncRNA downstream 1046 31912678 ~ 31915608 (-) True G119347
TU160790 lncRNA downstream 1046 31912678 ~ 31915608 (-) False G119347
XR_005640619.1 lncRNA downstream 252830 31660615 ~ 31663824 (-) True LOC120567841
TU160702 lncRNA downstream 302330 31614016 ~ 31614324 (-) True G119284
TU160805 lncRNA upstream 69 31918039 ~ 31919127 (-) True G119358
TU160823 lncRNA upstream 31489 31949459 ~ 31966226 (-) True G119368
TU160853 lncRNA upstream 187374 32105344 ~ 32110517 (-) True G119394
TU160933 lncRNA upstream 205369 32123339 ~ 32124490 (-) True G119455
TU160952 lncRNA upstream 408802 32326772 ~ 32330072 (-) True G119472
XM_039816637.1 mRNA downstream 49957 31865738 ~ 31866697 (-) True LOC120568891
XM_039816634.1 mRNA downstream 56576 31838382 ~ 31860078 (-) True kcnj9
XM_039816983.1 mRNA downstream 95230 31802504 ~ 31821424 (-) False LOC120569109
XM_039816984.1 mRNA downstream 101550 31802504 ~ 31815104 (-) True LOC120569109
XM_039815237.1 mRNA downstream 130470 31714287 ~ 31786184 (-) False LOC120568044
XM_039816160.1 mRNA upstream 446749 32364719 ~ 32374518 (-) True LOC120568568
XM_039816157.1 mRNA upstream 570847 32488817 ~ 32513979 (-) False LOC120568565
XM_039816155.1 mRNA upstream 570847 32488817 ~ 32513978 (-) False LOC120568565
XM_039816153.1 mRNA upstream 570847 32488817 ~ 32513978 (-) True LOC120568565
XM_039816154.1 mRNA upstream 570847 32488817 ~ 32500101 (-) False LOC120568565
TU160692 other downstream 341464 31490252 ~ 31575190 (-) False zeb1a
TU160586 other downstream 741703 31126430 ~ 31174951 (-) True G119177
TU160575 other downstream 745044 31169922 ~ 31171610 (-) True G119169
TU160576 other downstream 745044 31170382 ~ 31171610 (-) False G119169
TU160545 other downstream 1040574 30864246 ~ 30876080 (-) True LOC120568929
TU160835 other upstream 129507 32047477 ~ 32051439 (-) True G119379
TU160944 other upstream 298532 32216502 ~ 32226360 (-) False G119465
TU160945 other upstream 300537 32218507 ~ 32226360 (-) True G119465
TU161095 other upstream 844375 32762345 ~ 32765076 (-) False fcer1gl
TU161097 other upstream 844375 32762345 ~ 32765076 (-) False fcer1gl

Expression Profile