RNA id: TU160818


Basic Information

Item Value
RNA id TU160818
length 404
RNA type TUCP
GC content 0.59
exon number 4
gene id LOC120567694
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32067563 ~ 32071312 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGCGGGAGGTCTCAGCTGTGGCGGGGACCCTGAGTGCAGTCCTTTTACATTCTAACCTGCCGACGCCAGGACATCCAGCATGGGCAGAGGGTGTGGTGCCGATGGAGGGAAGGCGAAGAAGAAGGAAAGGGACTTGGATGAGCTAAAGAAGGAGGTGTCCTTGGACGACCACAAAATATCTCTGGATGATCTGGGAAAACGCTATGGAGTGGACCTCACGAGGGGCCTGACCAGCGCCAGAGCGTTGGAGATTCTTGCCAGGGACGGTCCAAACGCCCTGACCCCTCCCCCCACCACACCTGAGTGGGTCAAGTTCTGCCGTCAGCTGTTCGGCGGCTTCTCCATCCTGCTCTGGATCGGTGCCATCCTCTGCTTCCTAGCTTACACCATCCAGGTGGCCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640633.1 lncRNA upstream 8239 32056055 ~ 32059373 (+) True LOC120567918
TU160760 lncRNA upstream 152011 31849440 ~ 31915601 (+) True G119332
TU160757 lncRNA upstream 152908 31912678 ~ 31914704 (+) True pip4p1a
TU160753 lncRNA upstream 224641 31838382 ~ 31842971 (+) True G119328
TU160729 lncRNA upstream 336322 31730145 ~ 31731290 (+) True G119306
TU160858 lncRNA downstream 53264 32124564 ~ 32124915 (+) True G119398
TU160878 lncRNA downstream 269825 32341125 ~ 32341363 (+) True G119409
TU160886 lncRNA downstream 276821 32348121 ~ 32349713 (+) True G119415
TU160887 lncRNA downstream 293266 32364566 ~ 32364768 (+) True G119416
TU160888 lncRNA downstream 301263 32372563 ~ 32403711 (+) True G119417
XM_039816191.1 mRNA upstream 16177 32031653 ~ 32051435 (+) False mpz
XM_039816189.1 mRNA upstream 16179 32031652 ~ 32051433 (+) True mpz
XM_039816190.1 mRNA upstream 19969 32031652 ~ 32047643 (+) False mpz
XM_039816638.1 mRNA upstream 51260 31942203 ~ 32016352 (+) True lig1
XM_039816639.1 mRNA upstream 51260 31942203 ~ 32016352 (+) False lig1
XM_039815958.1 mRNA downstream 3776 32075076 ~ 32115947 (+) True LOC120568430
XM_039816809.1 mRNA downstream 47653 32118953 ~ 32124498 (+) True sdhc
XM_039815394.1 mRNA downstream 57158 32128458 ~ 32216046 (+) False cadm3
XM_039815393.1 mRNA downstream 57162 32128462 ~ 32222813 (+) False cadm3
XM_039815392.1 mRNA downstream 57163 32128463 ~ 32222813 (+) False cadm3
TU160769 other upstream 155005 31888928 ~ 31912607 (+) False pip4p1a
TU160764 other upstream 198819 31865755 ~ 31868793 (+) True dnaaf6
TU160672 other upstream 606704 31459864 ~ 31460908 (+) True G119257
TU160516 other upstream 867598 31198960 ~ 31200014 (+) False G119123
TU160502 other upstream 871379 31171217 ~ 31196233 (+) True G119114
unassigned_transcript_563 other downstream 55057 32126357 ~ 32126430 (+) True trnar-ucu_14
TU160865 other downstream 117680 32188980 ~ 32226483 (+) True cadm3
TU160866 other downstream 117772 32189072 ~ 32226483 (+) False cadm3
XR_005640735.1 other downstream 381405 32452705 ~ 32455106 (+) False LOC120568569
XR_005640734.1 other downstream 381405 32452705 ~ 32455106 (+) False LOC120568569

Expression Profile