RNA id: XM_039814663.1


Basic Information

Item Value
RNA id XM_039814663.1
length 465
RNA type mRNA
GC content 0.58
exon number 4
gene id LOC120567694
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32067563 ~ 32071312 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGGGGGTGCAAGGCCCAAAAAAAGCCACCAATGTCTTCCACACGTGAGGGCGGGAGGTCTCAGCTGTGGCGGGGACCCTGAGTGCAGTCCTTTTACATTCTAACCTGCCGACGCCAGGACATCCAGCATGGGCAGAGGGTGTGGTGCCGATGGAGGGAAGGCGAAGAAGAAGGAAAGGGACTTGGATGAGCTAAAGAAGGAGGTGTCCTTGGACGACCACAAAATATCTCTGGATGATCTGGGAAAACGCTATGGAGTGGACCTCACGAGGGGCCTGACCAGCGCCAGAGCGTTGGAGATTCTTGCCAGGGACGGTCCAAACGCCCTGACCCCTCCCCCCACCACACCTGAGTGGGTCAAGTTCTGCCGTCAGCTGTTCGGCGGCTTCTCCATCCTGCTCTGGATCGGTGCCATCCTCTGCTTCCTAGCTTACACCATCCAGGTGGCCACGAGGAGCACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640633.1 lncRNA upstream 8190 32056055 ~ 32059373 (+) True LOC120567918
TU160760 lncRNA upstream 151962 31849440 ~ 31915601 (+) True G119332
TU160757 lncRNA upstream 152859 31912678 ~ 31914704 (+) True pip4p1a
TU160753 lncRNA upstream 224592 31838382 ~ 31842971 (+) True G119328
TU160729 lncRNA upstream 336273 31730145 ~ 31731290 (+) True G119306
TU160858 lncRNA downstream 53252 32124564 ~ 32124915 (+) True G119398
TU160878 lncRNA downstream 269813 32341125 ~ 32341363 (+) True G119409
TU160886 lncRNA downstream 276809 32348121 ~ 32349713 (+) True G119415
TU160887 lncRNA downstream 293254 32364566 ~ 32364768 (+) True G119416
TU160888 lncRNA downstream 301251 32372563 ~ 32403711 (+) True G119417
XM_039816191.1 mRNA upstream 16128 32031653 ~ 32051435 (+) False mpz
XM_039816189.1 mRNA upstream 16130 32031652 ~ 32051433 (+) True mpz
XM_039816190.1 mRNA upstream 19920 32031652 ~ 32047643 (+) False mpz
XM_039816638.1 mRNA upstream 51211 31942203 ~ 32016352 (+) True lig1
XM_039816639.1 mRNA upstream 51211 31942203 ~ 32016352 (+) False lig1
XM_039815958.1 mRNA downstream 3764 32075076 ~ 32115947 (+) True LOC120568430
XM_039816809.1 mRNA downstream 47641 32118953 ~ 32124498 (+) True sdhc
XM_039815394.1 mRNA downstream 57146 32128458 ~ 32216046 (+) False cadm3
XM_039815393.1 mRNA downstream 57150 32128462 ~ 32222813 (+) False cadm3
XM_039815392.1 mRNA downstream 57151 32128463 ~ 32222813 (+) False cadm3
TU160769 other upstream 154956 31888928 ~ 31912607 (+) False pip4p1a
TU160764 other upstream 198770 31865755 ~ 31868793 (+) True dnaaf6
TU160672 other upstream 606655 31459864 ~ 31460908 (+) True G119257
TU160516 other upstream 867549 31198960 ~ 31200014 (+) False G119123
TU160502 other upstream 871330 31171217 ~ 31196233 (+) True G119114
unassigned_transcript_563 other downstream 55045 32126357 ~ 32126430 (+) True trnar-ucu_14
TU160865 other downstream 117668 32188980 ~ 32226483 (+) True cadm3
TU160866 other downstream 117760 32189072 ~ 32226483 (+) False cadm3
XR_005640735.1 other downstream 381393 32452705 ~ 32455106 (+) False LOC120568569
XR_005640734.1 other downstream 381393 32452705 ~ 32455106 (+) False LOC120568569

Expression Profile