RNA id: TU160858


Basic Information

Item Value
RNA id TU160858
length 352
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G119398
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32124564 ~ 32124915 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCAAATGCAGCAAAAGTACAAAGTGCATGCAAATGTGACCCAGATCTTTCCACACTTGGTTCTCTGTGTGAACAACAACCAGCGTCCAAAATTAGATGTGTCCTACATGTTATATCCTTAGGTAATTTATCTAATCGTTCTGTGACGTCAAATTCATTAATCACTTTTCTTAGCCCTTGGTGCTCAGTCCCTGTGTGCCTGCCCGTTGTCTCTGTACacaggagtgtgtgtttgtgtctggggAGCGGCTGTTTACTGTAGGCTGTCATTCATATTTTACCTTCTCCAGGCCACGGCTGCTCAGATGCACTTTTAACATTGGGAAAAAGAGTCTGAAATGTGGAGAGGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640633.1 lncRNA upstream 65191 32056055 ~ 32059373 (+) True LOC120567918
TU160760 lncRNA upstream 208963 31849440 ~ 31915601 (+) True G119332
TU160757 lncRNA upstream 209860 31912678 ~ 31914704 (+) True pip4p1a
TU160753 lncRNA upstream 281593 31838382 ~ 31842971 (+) True G119328
TU160729 lncRNA upstream 393274 31730145 ~ 31731290 (+) True G119306
TU160878 lncRNA downstream 216210 32341125 ~ 32341363 (+) True G119409
TU160886 lncRNA downstream 223206 32348121 ~ 32349713 (+) True G119415
TU160887 lncRNA downstream 239651 32364566 ~ 32364768 (+) True G119416
TU160888 lncRNA downstream 247648 32372563 ~ 32403711 (+) True G119417
XR_005640736.1 lncRNA downstream 379297 32504212 ~ 32505293 (+) True LOC120568573
XM_039816809.1 mRNA upstream 66 32118953 ~ 32124498 (+) True sdhc
XM_039815958.1 mRNA upstream 8617 32075076 ~ 32115947 (+) True LOC120568430
XM_039814663.1 mRNA upstream 53252 32067563 ~ 32071312 (+) True LOC120567694
XM_039816191.1 mRNA upstream 73129 32031653 ~ 32051435 (+) False mpz
XM_039816189.1 mRNA upstream 73131 32031652 ~ 32051433 (+) True mpz
XM_039815394.1 mRNA downstream 3543 32128458 ~ 32216046 (+) False cadm3
XM_039815393.1 mRNA downstream 3547 32128462 ~ 32222813 (+) False cadm3
XM_039815392.1 mRNA downstream 3548 32128463 ~ 32222813 (+) False cadm3
XM_039815395.1 mRNA downstream 3552 32128467 ~ 32222813 (+) False cadm3
XM_039816142.1 mRNA downstream 107293 32232208 ~ 32325647 (+) True kirrel1b
TU160818 other upstream 53264 32067612 ~ 32071300 (+) False LOC120567694
TU160769 other upstream 211957 31888928 ~ 31912607 (+) False pip4p1a
TU160764 other upstream 255771 31865755 ~ 31868793 (+) True dnaaf6
TU160672 other upstream 663656 31459864 ~ 31460908 (+) True G119257
TU160516 other upstream 924550 31198960 ~ 31200014 (+) False G119123
unassigned_transcript_563 other downstream 1442 32126357 ~ 32126430 (+) True trnar-ucu_14
TU160865 other downstream 64065 32188980 ~ 32226483 (+) True cadm3
TU160866 other downstream 64157 32189072 ~ 32226483 (+) False cadm3
XR_005640735.1 other downstream 327790 32452705 ~ 32455106 (+) False LOC120568569
XR_005640734.1 other downstream 327790 32452705 ~ 32455106 (+) False LOC120568569

Expression Profile