RNA id: TU160865


Basic Information

Item Value
RNA id TU160865
length 4529
RNA type TUCP
GC content 0.43
exon number 3
gene id cadm3
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32128458 ~ 32226483 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttacacacacacacacacacacacacacacggacacacacacggacacatatGTACATGAGTCAGTTTTGGGGAAAACTCTTCTCACACAGACTTGAATGCTCGTAGATGTTCCGATTAATAAGCGCGAGCCTCCTACTGTACTAACAACTGAATTATCTCTGAATGACACATTAACACCTTTTTACACAAACCTCGTACTTCTAACTGTCAGCGCCTTCCGAAAAGCTAAATTGTAACTCACATTCCGGCATCCCGAGCTCTGATACTTCACTTCTCACACCTCGTCCGACCTGTCTCCTTCAACATCTAAACCAAAACCCCCGGCTCTGTCTCTTCACGTTTCTGTCCTCATTCTTTCCATCTGACAGGGCGGTATCCCCCTGCAAACATTCTACTGGCGAAGGAATCCATCCAAAGCAAATTATTACTGACAAACctaatctccctctctctctcacagtttAATCTTTTTATGCCATCGAACCTTCTTCCCACGTCCTCACAAACCCTGGTTCGAACCGTTGAGTTTCCCACAATGCAGCACCACGACATGCAGCACTCATGCAAACATAGCATTCCCACCTTGCGCTACCAAGCCAAGGGGCTCcagtatacatatataaatatatatatatagaattaTATAGCATTCTTTTTACATGACAGAAAATGTTTGGTGTGCTGTaaatacactctctctctctctgtcctctctcccaccttctcttcttcttctatccctcttctctttctctacaTATCCCTCTCTCCTGTATCTCATACAGTCTGTTACTGCATTACAGTAACTTAtatactcaaaaaaaaaaaaaaagcctgcctGTTTTTTATTACATGCGTGGAAATGCAGAGTCAAAACTATCAAtatctggggaaaaaaatattaaaaataacgaCAATGATGTTGCGATGAAAACTAACCTTAATTGCAAATATTTGTATGAGGAACATtgtccttcttcttctttcttttattctttttggTTTTGGGGATTTATGGGAGATTTTCTCTCGTCAGTGTCTCAGTGTGTTACTGTCAGTGTTAACGGTTTACAGTGTCTGTCGGTTTGTCAGTCCAGGAGTCCATACAACTCCCTTTTTCCGAGCTGTATTTTGATTTTGAGGTTTAACGTTTTCATGCTATATttcttaaccttttttttttttctttttctcggTGCGCCACATTCAGTGTTGCTATTTTCTCCCTGCTTTGTCTGCCCCTCTGCTCccaaacactcaactgtagcaAAACCTCTGTAGAATGCAGCAGCTTTCGAAAAAGGTGTCAAAGTGTTTTGGTCGAGCTTTCCTGGAGTATCGCTGCCCGGCGCACGTGGACCGCTGGGCTTTTCCTTCCACTCCGCCATCTCTGAACGTTCTGCTCGTAGGCCATCCTTCTCCCTGCAGCAGACTGCTTGTCTTGGCGAGCTTGGCGCTAAATTCATTGAGtagtgacatcatgacttcctCTAAGAAGCTGGCACGCTCGCTGCTTCAGGGAAGTGAAAATGCTTGCTTGCTTTCCACTACGGGGCTGAACAGGATTGCCTACATGCATTATGACAAACTTCCTGGCAAATACAAAACCAACCCTTTCTGTTATTGtttcttgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttattgcaaGCAGGAATCATATGCCAACTTAGCAAAAGGTTCCCATAAATGAACAGTGTTTTATTAAGGTTGGGAGTTCGCATTGGCGCTGGCAAGCTCCACTTGGCCCGGCCCGGTCGTGGAAATTGATTGCAATCTAACTAAGAGGCTCTGGGCTCCAGACTGTACACACGCCAAGGTTTGGCTTTGGTGGGCAGAGTGCCCGAGCGGGAGTCTGGGCTGCACTAACACTGAAGAAAGTCATTAAGGAACGTAAATGTCCTTTTCCCTTCCAGCCCCCCCACCCCAGCCCCCTCAACCCCCCATGCGCTCCACTCGTCCATTTCATTTAATTCTTTAATCAGTCATCTCGTCTGCGTCCTGATCCACCTTCACCCGGTTCTCTCCTCCCCTCATCCCTccttccccctcctctccccagCTCCATCTCTGATCCGCACCCTcaatgctttctctctctcatttggTCCATAGACGTACAGTAGAAGTAGCGTCTCTCGGTTTCCTGGCATACGGCGATGGCTCTCTGCAGCACTTTTTGGGCTGCGTTTTAGGAGAGGAATCCATTTGCTGTTGTCAGTCCTACCCTTAGACAGTGATGTCTGTGATAGTTTTTTTGTACACCCTTTTTTGGGAACGTTCAGGGATTGTGCTTTTCGTACCTTTCCCCACATTGTTGTTAACCGCAACCTAGCTAGCTGCTTTGACAGCGAGTGGCCCGGCTGGTGTGTCTTTAAGCTAGCTATACTACAAAAGGGTAACGCGACCTGAAGCAGGGTCatctgctgtttttcttttctttcgtaGCATCTCGGTTGGAATTTGGGGTGGCGTCGCATTAAACTTGGCTCAAACAGTGTTCCACTGGAGACTGATTTGACATGCACCAGAAAACTTGAAACGAACCGAGTTGAATATTTCGAAGAATTCAGACCGCTGCTTATCCCATGTTTGCTCTGCAACACTCTTCAGCTTTACACAGTATTCATGTCTGCAGACCAGAGGATGGGCTTTGTCTCGCGGAGCTTAGCCAAGAGTAACCTTTGATTTGTATTTAACCCTAGTCCAATTCTGCTCTGTGAACAGAGAAAAGGAATACTGGCCTCATACTCAACAAAGTGTAGTGTCTTTTAAAAACTAATGGACCTGTATTTGCCTGTAATTTATCGTCCTGTCCTTTGTCTTAGTTAATGTGCTAGCATGTATAGCTTGCATGAGAAAAAGGTTGGAAATGTAGATAGTGTTGGAGATGAGAAGTGCCGACAAGAATCTCTCCTGAGACGAGAGCGGCGGCCTGCTGTCCTCTGATCTGCAAACATACGGCGTGTCCCAGTTCAACCCGCCTGTACCTCCTCAACACAGCAGTCCTCTGGatacactggaaaaaaaaggccacttcaaaaaaaaaatgtacaatgaaTACAAGGTGATTTCTTTGCTTGtaataagttaaaaaaaaatctgccaatGGAACAAGTGAAAATTCATTTGGTAAGATTTCTTGAAGAAGATGATATTCAAACAAGATGATCCATCTTTTACAAATAACACAGCGGCTTAAAAACCTTTTGAGATGTCGAAAAAGCTTTCTTCATCCGAGATCTGACTCATAACGAGATGTGTTCAAGACTCTTTCACTAAACAAGATATCTGAGATGCATCGTCTAAAGCGAAGTCCCTGCGTCTCACTGAAATATCACTCGTTAAATGATTGTCTTATATTAAGTGTTATTAGATATTTTGAAATTAGATGAATATCCTTGGTaagatgttgcttttttttgcagtgtaacACTGAGGAAACTGATGAAGTAGGACTCATTCTGCTTCTCTCCCACCAATCCTGCGTTAAACCCATGTAGGGGTACAATGGCGTTGAATTGGGATGTGCAGTCGGCCCCATTCATATTTCATTGCATCGGTGCAATAATGACTAGCTGTCACCAGAGGCCAGCAAACAGCAGCTTTTCTTTACTCTCTTCAGTCGTACCAAGCTGTCCTGCCCCCACTCCACTCTCATCAACTCCTCTTTAGGCAGTCGCACACTCGCTGCCAGTCATCGCTTTGTTTTTGTAGTATAAACAAATTgatttttaaattatgttttgtaAAAGGTGTGCATACTCTTCAAAGTATTACTTTCAGTTGAAGTGttaatcattttcttttctctttttttcagttaGATTTTCCGCTTGGAGGttagaaatgtctttttttccccgCATTTTATTGTTTCAACAACcatttttctacaattttatGTATATAGTGTTGCCTTTACTGGATACTCTTACAGGCACGCCCATATACACACTttgcacacacatccacacacatatCTGGATATGCACGGCAGGCATGTGGTCTGTGACTATGGTGTAtttgtacatatgtgtgtgtttgtgtatgagtGTGAGGTGTGTAGTAATTGACCCAAGCAGACTCCGGAGACACTCTTACATGTCTTGCATTCACACAAAAAATGTTCTTATTTggatgactaaaacaacttcctTGTTTTCAGACTTATTATTTTGGGTGACAAGTCTTCCTTTTGAATAAATATCCATATCACATGAGAACAGTGCTGTCATGTATGTTAATTTGTACTACggctgatgatgtcatcaaggCGAGACCCAACCGCATGCTGTGGTGGGTGTGCGTCTGTTGGATGTTcatacagtatttgttttggttttttgttAAAATACCAGTTCAGTTGTTGACTTCAATAAACATGCATTTGGGTTAATTTAACCTGTCTTGTCGTTGGTTCTTCCTGTTCCGAAACTTTCAAAATCAGATCTTATCCCAAATACAAAAATGTTCATCCAGACTGTGATCTGTTTTCTGct

Function

GO: NA

KEGG:

id description
ko04721 Synaptic vesicle cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160858 lncRNA upstream 64065 32124564 ~ 32124915 (+) True G119398
XR_005640633.1 lncRNA upstream 129607 32056055 ~ 32059373 (+) True LOC120567918
TU160760 lncRNA upstream 273379 31849440 ~ 31915601 (+) True G119332
TU160757 lncRNA upstream 274276 31912678 ~ 31914704 (+) True pip4p1a
TU160753 lncRNA upstream 346009 31838382 ~ 31842971 (+) True G119328
TU160878 lncRNA downstream 114642 32341125 ~ 32341363 (+) True G119409
TU160886 lncRNA downstream 121638 32348121 ~ 32349713 (+) True G119415
TU160887 lncRNA downstream 138083 32364566 ~ 32364768 (+) True G119416
TU160888 lncRNA downstream 146080 32372563 ~ 32403711 (+) True G119417
XR_005640736.1 lncRNA downstream 277729 32504212 ~ 32505293 (+) True LOC120568573
XM_039816809.1 mRNA upstream 64482 32118953 ~ 32124498 (+) True sdhc
XM_039815958.1 mRNA upstream 73033 32075076 ~ 32115947 (+) True LOC120568430
XM_039814663.1 mRNA upstream 117668 32067563 ~ 32071312 (+) True LOC120567694
XM_039816191.1 mRNA upstream 137545 32031653 ~ 32051435 (+) False mpz
XM_039816190.1 mRNA upstream 141337 32031652 ~ 32047643 (+) False mpz
XM_039816142.1 mRNA downstream 5725 32232208 ~ 32325647 (+) True kirrel1b
XM_039816143.1 mRNA downstream 5725 32232208 ~ 32325647 (+) False kirrel1b
XM_039816145.1 mRNA downstream 120806 32347289 ~ 32355822 (+) True LOC120568561
XM_039816147.1 mRNA downstream 120821 32347304 ~ 32355822 (+) False LOC120568561
XM_039816146.1 mRNA downstream 120824 32347307 ~ 32355822 (+) False LOC120568561
unassigned_transcript_563 other upstream 62550 32126357 ~ 32126430 (+) True trnar-ucu_14
TU160818 other upstream 117680 32067612 ~ 32071300 (+) False LOC120567694
TU160769 other upstream 276373 31888928 ~ 31912607 (+) False pip4p1a
TU160764 other upstream 320187 31865755 ~ 31868793 (+) True dnaaf6
TU160672 other upstream 728072 31459864 ~ 31460908 (+) True G119257
XR_005640735.1 other downstream 226222 32452705 ~ 32455106 (+) False LOC120568569
XR_005640734.1 other downstream 226222 32452705 ~ 32455106 (+) False LOC120568569
TU161081 other downstream 542224 32768707 ~ 32769852 (+) True G119582
TU161083 other downstream 548591 32775074 ~ 32775682 (+) True G119584
TU161084 other downstream 554505 32780988 ~ 32781471 (+) True G119585

Expression Profile