RNA id: XM_039815394.1


Basic Information

Item Value
RNA id XM_039815394.1
length 2103
RNA type mRNA
GC content 0.57
exon number 10
gene id cadm3
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32128458 ~ 32226483 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTTTGCTGCAGTGAACGGCAGctgtggagagagaggaagagagagagagacggatatacaaacagagagagtgagagagagaaggagagagagagagagagagagagagcgcgcggaggaaaaagcaagaaaaacaaaagagtCAGGAGAAGGAACAAGGAGATTAAAAAGTCGATAAAAACAGACTGAGAGAAGGCTCCGGACCAGCGACTGCTGCGCATCAAAGGAGGGACCGTACTGAGGACCTTACTGGAGACCAGCGCCAACAAAACCCGACTCCGGAGGCGGAATAtaacgGTGACACTCCAGAGCTCCTCTGCCCTCCTGAGGATTCAGTGAGACAGGCGGATCTGTGTGCCTGACCATGGCCCTCCCATCAGCCCGCTCCACATTATGGAGTGTCAGCTTATTGATGGTACTGTTCGCAGCTGCGGTTCGCAGCAACATTATCTTCGACGACGACCCCTTGCAGCCGGTGACCACAGACAAGACGGTGTCCGTAGGGGGGACAGTGACACTGACCTGCACGGTGCCCGAGAGCGATAACTCCTCACTGCAATGGTCCAACACTGCACAGCAGACCCTGTACTTTGGAGAAAAGAGAGcGCTGAGAGATAACCGCATCCAGCTGCACCGCTCCACACCCACCGAGCTTTCCATAACCATCGCTGAAGTGCAGATGTCCGACGAGGGCGAGTACACCTGCTCCATCTTCACCATGCCGGTCCGCACCGCCCGGGCTACAGTCACCGTGCTAGgtgTGCCCGGTGAACCTCAGATCTTGGGCTTTGAGAATGCAGTGCCGGAGGGGGGCAAAGTCACCCTGACCTGCACCAGTACAGGCAGCAAACCCCCCGCCAAGCTGCACTGGTACCGAGGAGACATGGAGCTGGAAGGACATTCAAACGTGGTGGAGACCGTTCCAGACAATCCGACATACAACGTGAGCAGCGAGCTCACCCTGGAGGTGAGCCGCAGTGACGACAAGGCCCTCATCACCTGTGCCGTCGACCATCCCTCTCTCGCTCCGGGGGACAAGAGGAGCGAGCGCGCTCTGCGAGTGTTGTATTCCCCTGACGTGCGGATCACGCCTGAGAGCAATCTGCCTAGAGAGGGGGAGAAGTTTTATCTTCAGTGTGTGGGCAACGGCAACCCCGAgcCCACCTCTTACAGGTGGGAGAAGAAGGATGGAGAGCTCCCCCCACTGGCCAAAGCCGACGGTGCTTTCTTGCGCTTCGAGATGCTCAACAAATCCGATAATGGCGTCTACCTCTGCGAAGCCAACAACGGCATAGGACACAACCTGGGGGAGTACACACTGCTGGTGCAAGGCCTCATGGACCCAGACTCCCCAGACACCACCTTATCCTTCCTTGGCTCTCCAtcctctccatcctcctcccTCCCACCCTCCTCTCCCCCTGACGTATTCTCTGGCTCCGGCTCTGATCCCACTTACTCCTACTCCTACCCTTCTCTCCTCgcctccacctcctcccccgAGCCTTCCCCAGACTCTTCACCTTCCCCAGACTCCTCATCTTCCCCAGACTCCTCACCTTCCCCAGACTCCTCACCTTCCCCAGACTACCCACCTTCCCCCGACTCCTCaccttcccccaccccctccgcGGCTGACGTGCCGACCACTGTCTCTGAATTCTCCACCACCACCCTCTCCAATGCCCTCTTCCCCGACCTGccgctctctccctcctcctccctgactccccctccctcctccacccGGACTCCTCCTCCCTCGTCCGCAAGCATCGCTCCTTCCACTGCCAACCCCTCCCCcgcctcctccctcactccctcaGTTTCCGTCCGGCTGAATGGAGTTTACACTTTCACAGTCAAGGATACTGGGAGCTGgttttacatgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatgcaaacacaaacacatactcaAAGCACTCAAGGAGACTGGGAGTTTgttttacatgcacacacatgcaaatactGAAACATACTGAAAGCTGACAGCAAGACAAGAATTGAagaaacacaataaaggaaataatGGCATTCGTGTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160858 lncRNA upstream 3543 32124564 ~ 32124915 (+) True G119398
XR_005640633.1 lncRNA upstream 69085 32056055 ~ 32059373 (+) True LOC120567918
TU160760 lncRNA upstream 212857 31849440 ~ 31915601 (+) True G119332
TU160757 lncRNA upstream 213754 31912678 ~ 31914704 (+) True pip4p1a
TU160753 lncRNA upstream 285487 31838382 ~ 31842971 (+) True G119328
TU160878 lncRNA downstream 125079 32341125 ~ 32341363 (+) True G119409
TU160886 lncRNA downstream 132075 32348121 ~ 32349713 (+) True G119415
TU160887 lncRNA downstream 148520 32364566 ~ 32364768 (+) True G119416
TU160888 lncRNA downstream 156517 32372563 ~ 32403711 (+) True G119417
XR_005640736.1 lncRNA downstream 288166 32504212 ~ 32505293 (+) True LOC120568573
XM_039816809.1 mRNA upstream 3960 32118953 ~ 32124498 (+) True sdhc
XM_039815958.1 mRNA upstream 12511 32075076 ~ 32115947 (+) True LOC120568430
XM_039814663.1 mRNA upstream 57146 32067563 ~ 32071312 (+) True LOC120567694
XM_039816191.1 mRNA upstream 77023 32031653 ~ 32051435 (+) False mpz
XM_039816189.1 mRNA upstream 77025 32031652 ~ 32051433 (+) True mpz
XM_039816142.1 mRNA downstream 16162 32232208 ~ 32325647 (+) True kirrel1b
XM_039816143.1 mRNA downstream 16162 32232208 ~ 32325647 (+) False kirrel1b
XM_039816145.1 mRNA downstream 131243 32347289 ~ 32355822 (+) True LOC120568561
XM_039816147.1 mRNA downstream 131258 32347304 ~ 32355822 (+) False LOC120568561
XM_039816146.1 mRNA downstream 131261 32347307 ~ 32355822 (+) False LOC120568561
unassigned_transcript_563 other upstream 2028 32126357 ~ 32126430 (+) True trnar-ucu_14
TU160818 other upstream 57158 32067612 ~ 32071300 (+) False LOC120567694
TU160769 other upstream 215851 31888928 ~ 31912607 (+) False pip4p1a
TU160764 other upstream 259665 31865755 ~ 31868793 (+) True dnaaf6
TU160672 other upstream 667550 31459864 ~ 31460908 (+) True G119257
XR_005640735.1 other downstream 236659 32452705 ~ 32455106 (+) False LOC120568569
XR_005640734.1 other downstream 236659 32452705 ~ 32455106 (+) False LOC120568569
TU161081 other downstream 552661 32768707 ~ 32769852 (+) True G119582
TU161083 other downstream 559028 32775074 ~ 32775682 (+) True G119584
TU161084 other downstream 564942 32780988 ~ 32781471 (+) True G119585

Expression Profile