RNA id: TU160886


Basic Information

Item Value
RNA id TU160886
length 390
lncRNA type intronic
GC content 0.36
exon number 2
gene id G119415
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32348121 ~ 32349713 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGAGAGAcccataaatggacgcCGGAGGAAACCCAGCAGCTGATCCACTTTCTGGCTGAAAACGAGCAGTAATCATTTGAATTCATTCCTGTTCATGTacctgtacattgttgttggttatgatacaggacactaatgaaagaaatggggttggagggaaaggttactggccaacaggcatcacactatggtctggaatttcagaatagctgtagttttgtttgtttgtggtcttgtgtgtcttttagttttatacatttgagtgccttttttaGTGTGACATCTAAGTTATTGTTCTAATAGTTGATAATGGTTCTCTACATTTTTCTataatgtttttgcatgttatgtttatttttttgggaaataaagactttttttaacaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160878 lncRNA upstream 6758 32341125 ~ 32341363 (+) True G119409
TU160858 lncRNA upstream 223206 32124564 ~ 32124915 (+) True G119398
XR_005640633.1 lncRNA upstream 288748 32056055 ~ 32059373 (+) True LOC120567918
TU160760 lncRNA upstream 432520 31849440 ~ 31915601 (+) True G119332
TU160757 lncRNA upstream 433417 31912678 ~ 31914704 (+) True pip4p1a
TU160887 lncRNA downstream 14853 32364566 ~ 32364768 (+) True G119416
TU160888 lncRNA downstream 22850 32372563 ~ 32403711 (+) True G119417
XR_005640736.1 lncRNA downstream 154499 32504212 ~ 32505293 (+) True LOC120568573
TU160929 lncRNA downstream 199431 32549144 ~ 32555738 (+) True G119453
TU161009 lncRNA downstream 214128 32563841 ~ 32564486 (+) True G119519
XM_039816142.1 mRNA upstream 22474 32232208 ~ 32325647 (+) True kirrel1b
XM_039816143.1 mRNA upstream 22474 32232208 ~ 32325647 (+) False kirrel1b
XM_039815393.1 mRNA upstream 125308 32128462 ~ 32222813 (+) False cadm3
XM_039816144.1 mRNA downstream 2215 32351928 ~ 32355822 (+) False LOC120568561
XM_039816170.1 mRNA downstream 87745 32437458 ~ 32441095 (+) True LOC120568571
XM_039816171.1 mRNA downstream 87745 32437458 ~ 32441095 (+) False LOC120568571
XM_039816169.1 mRNA downstream 87747 32437460 ~ 32441094 (+) False LOC120568571
XM_039816165.1 mRNA downstream 102992 32452705 ~ 32471570 (+) False LOC120568569
TU160865 other upstream 121638 32188980 ~ 32226483 (+) True cadm3
TU160866 other upstream 121638 32189072 ~ 32226483 (+) False cadm3
unassigned_transcript_563 other upstream 221691 32126357 ~ 32126430 (+) True trnar-ucu_14
TU160818 other upstream 276821 32067612 ~ 32071300 (+) False LOC120567694
TU160769 other upstream 435514 31888928 ~ 31912607 (+) False pip4p1a
XR_005640735.1 other downstream 102992 32452705 ~ 32455106 (+) False LOC120568569
XR_005640734.1 other downstream 102992 32452705 ~ 32455106 (+) False LOC120568569
TU161081 other downstream 418994 32768707 ~ 32769852 (+) True G119582
TU161083 other downstream 425361 32775074 ~ 32775682 (+) True G119584
TU161084 other downstream 431275 32780988 ~ 32781471 (+) True G119585

Expression Profile