RNA id: TU161034


Basic Information

Item Value
RNA id TU161034
length 1092
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G119541
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32633628 ~ 32634719 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttcagGACTACTCATCTAAGCCCCTGTTATTATAGAATACTGGTTAAAGCAGCCTTAAAGGTGCATTCAGTGATGAGTAGTTCATCAGCTCAGCCTACGACTGACAGAAATGCACTTGCATGATACATGAAATAACAGGTGtgttatacatacatatattgttatatatttaaatgtcaAATAGGTATCAATTTCACCTTTGCCTATTTTTTTCCAGTTGCTCTCTTCCCCAGTGAGCTTCCTCTTCCTTCTTTGTTATCTCCTTTTCTTGCAGCGCATCATCTTCTCCCTTATCTTTCCCTTCCACCTGCTCCAGATCTCCAACAGTTGATTCTTCACGTGCAGAAAATGCAAAGTTCAGTGACTGGCATCCTCTGTCCGCAGAGCTCTGGGATTGATGTGCAGGAACTCCATCTAGAGTGCATCTGTCCTGTTCGTGAGTGTCTGGTTCAAAGCTCAAATTCTTTAAGAAGAAATCAGGGGGAAGGCTTTTAACAAACATGCTGTCGTCTTCCTCGCTGCTGAAATCGTTGTCATCGCTGTCCTccactgcagcctcctcttcagaGCAGGACTCCTCCGGCCCGTGGATGGGGGAGGTCATGTACGGCAGGCTGAGGGATTTAGTGTGTCGGTTGTGTAAGTCGAGGCTGAGCGGCCTGTGCGGATTTAACTCTGCCTGGCTCTGGGTTCGTGTTTGAGGAGCTGGTGGCAGGActgtctgcagctctgcagGATGACTGGAAGGCCGCGCTTGCACCATCACTTCATACTCATCATCTGAGTATCCGGGAGGTTCAACGGAGAACTCGGTCACCTGAGAGGTAAAATAAAGAGACAGGAAGTGCAAGGGAGAAAACTCATCATTTAGCTTTTACCCCAAAGAATATGTGTTAAGAaatattttccaccttaaattACTGTTAAAATCTTGTCTGTATAAATACactctggatcaacagaagatatttccaggataattgcacGAGTTCCGGCATGTGAGCCACGCGCAggatgtccctccccttccgctctctgtgtgttgccattctcaaaCTGTGgtcgcttcgggaaacaacaacaaacttcgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161009 lncRNA upstream 69142 32563841 ~ 32564486 (+) True G119519
TU160929 lncRNA upstream 77890 32549144 ~ 32555738 (+) True G119453
XR_005640736.1 lncRNA upstream 128335 32504212 ~ 32505293 (+) True LOC120568573
TU160888 lncRNA upstream 229917 32372563 ~ 32403711 (+) True G119417
TU160887 lncRNA upstream 268860 32364566 ~ 32364768 (+) True G119416
TU161051 lncRNA downstream 74576 32709295 ~ 32710372 (+) True G119556
TU161078 lncRNA downstream 122664 32757383 ~ 32757653 (+) True G119579
TU161082 lncRNA downstream 135709 32770428 ~ 32770954 (+) True G119583
TU161085 lncRNA downstream 158298 32793017 ~ 32793495 (+) True G119586
TU161135 lncRNA downstream 201362 32836081 ~ 32837200 (+) True G119622
XM_039816543.1 mRNA upstream 47279 32575313 ~ 32586349 (+) True LOC120568820
XM_039816167.1 mRNA upstream 147220 32472620 ~ 32486408 (+) True LOC120568570
XM_039816168.1 mRNA upstream 147220 32472621 ~ 32486408 (+) False LOC120568570
XM_039816164.1 mRNA upstream 178522 32452705 ~ 32455106 (+) False LOC120568569
XM_039816001.1 mRNA downstream 16585 32651304 ~ 32656857 (+) True si:ch211-155e24.3
XM_039816005.1 mRNA downstream 82034 32716753 ~ 32721611 (+) True LOC120568452
XM_039816013.1 mRNA downstream 208380 32843099 ~ 32852397 (+) True myadmb
XM_039816004.1 mRNA downstream 294732 32929451 ~ 32938337 (+) True ltb4r2b
XM_039816010.1 mRNA downstream 306487 32941206 ~ 32945386 (+) True sdr39u1
XR_005640735.1 other upstream 178522 32452705 ~ 32455106 (+) False LOC120568569
XR_005640734.1 other upstream 178522 32452705 ~ 32455106 (+) False LOC120568569
TU160865 other upstream 407145 32188980 ~ 32226483 (+) True cadm3
TU160866 other upstream 407145 32189072 ~ 32226483 (+) False cadm3
unassigned_transcript_563 other upstream 507198 32126357 ~ 32126430 (+) True trnar-ucu_14
TU161081 other downstream 133988 32768707 ~ 32769852 (+) True G119582
TU161083 other downstream 140355 32775074 ~ 32775682 (+) True G119584
TU161084 other downstream 146269 32780988 ~ 32781471 (+) True G119585
XR_005640727.1 other downstream 355071 32989790 ~ 33047134 (+) False tep1
TU161294 other downstream 529197 33163916 ~ 33166100 (+) True LOC120568463

Expression Profile