RNA id: TU161155


Basic Information

Item Value
RNA id TU161155
length 354
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G119639
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32897115 ~ 32897468 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcataccagagggtactgcatggcgctgcaaaatgctctggtagccgttttggttcagggtgcctttcactctgtacaaatcaccgaccctggatccagcaaaacagccccagaccatcacgcttcctcctccatgtttgacagttgatgtcacacactgaggaaccatcctttcgcctactcaacggcgtacaaaaatcctgcgtgatgaaccgaagatttcaaatttggattcatcagtccatagcaccttcttccagtcttcagtagtccattggcagtgtttcttggcccaggcaagcctctttttcttattctgatgtcttagcaatggctttcttgctgcaactcgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161154 lncRNA upstream 67 32896731 ~ 32897048 (+) True G119638
TU161138 lncRNA upstream 56302 32839004 ~ 32840813 (+) True G119624
TU161136 lncRNA upstream 59027 32837303 ~ 32838088 (+) True G119623
TU161135 lncRNA upstream 59915 32836081 ~ 32837200 (+) True G119622
TU161085 lncRNA upstream 103620 32793017 ~ 32793495 (+) True G119586
TU161156 lncRNA downstream 279 32897747 ~ 32898018 (+) True G119640
XR_005640730.1 lncRNA downstream 266465 33163933 ~ 33166098 (+) False LOC120568463
TU161290 lncRNA downstream 283988 33181456 ~ 33185892 (+) True G119733
TU161305 lncRNA downstream 295119 33192587 ~ 33193199 (+) True G119744
TU161328 lncRNA downstream 370902 33268370 ~ 33269202 (+) True G119763
XM_039816013.1 mRNA upstream 44718 32843099 ~ 32852397 (+) True myadmb
XM_039816005.1 mRNA upstream 175504 32716753 ~ 32721611 (+) True LOC120568452
XM_039816001.1 mRNA upstream 240258 32651304 ~ 32656857 (+) True si:ch211-155e24.3
XM_039816543.1 mRNA upstream 310766 32575313 ~ 32586349 (+) True LOC120568820
XM_039816168.1 mRNA upstream 410707 32472621 ~ 32486408 (+) False LOC120568570
XM_039816004.1 mRNA downstream 31983 32929451 ~ 32938337 (+) True ltb4r2b
XM_039816010.1 mRNA downstream 43738 32941206 ~ 32945386 (+) True sdr39u1
XM_039815980.1 mRNA downstream 55808 32953276 ~ 32973757 (+) False parp2
XM_039815979.1 mRNA downstream 55808 32953276 ~ 32973739 (+) False parp2
XM_039815976.1 mRNA downstream 55808 32953276 ~ 32967776 (+) True parp2
TU161084 other upstream 115644 32780988 ~ 32781471 (+) True G119585
TU161083 other upstream 121433 32775074 ~ 32775682 (+) True G119584
TU161081 other upstream 127263 32768707 ~ 32769852 (+) True G119582
XR_005640735.1 other upstream 442009 32452705 ~ 32455106 (+) False LOC120568569
XR_005640727.1 other downstream 92322 32989790 ~ 33047134 (+) False tep1
TU161294 other downstream 266448 33163916 ~ 33166100 (+) True LOC120568463
TU161343 other downstream 407354 33304822 ~ 33307864 (+) True G119769
unassigned_transcript_564 other downstream 504783 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161565 other downstream 961074 33858542 ~ 33859847 (+) True G119957

Expression Profile