RNA id: TU161341


Basic Information

Item Value
RNA id TU161341
length 221
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G119767
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33290330 ~ 33290580 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agcAGAGCATCTCTCTCCTTcggctctctctctctctctctctctctctctctctctctctctctctctctacaccgCCCACTCCTCTCGCCGGCTTCTTCGCCTCATTCCATCGCCCGCTGATCCTTTCTGCATTTTGTTAGGGAAGAAGAAACCGCGCATTTTTggacccccccaaaaaaaattctCACCATGGCGAGTACCGAGGATAAATCAGCAAT

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161328 lncRNA upstream 21128 33268370 ~ 33269202 (+) True G119763
TU161305 lncRNA upstream 97131 33192587 ~ 33193199 (+) True G119744
TU161290 lncRNA upstream 104438 33181456 ~ 33185892 (+) True G119733
XR_005640730.1 lncRNA upstream 124232 33163933 ~ 33166098 (+) False LOC120568463
TU161156 lncRNA upstream 392312 32897747 ~ 32898018 (+) True G119640
TU161485 lncRNA downstream 223431 33514011 ~ 33515423 (+) False pkn2a
TU161502 lncRNA downstream 247592 33538172 ~ 33562071 (+) True G119901
TU161526 lncRNA downstream 307293 33597873 ~ 33598657 (+) True G119922
TU161561 lncRNA downstream 520496 33811076 ~ 33851937 (+) True gng12a
XR_005640825.1 lncRNA downstream 570858 33861438 ~ 33866996 (+) True LOC120569016
XM_039815267.1 mRNA upstream 4864 33273117 ~ 33285466 (+) True gk5
XM_039816011.1 mRNA upstream 109742 33126780 ~ 33180588 (+) True LOC120568455
XM_039816012.1 mRNA upstream 140038 33126780 ~ 33150292 (+) False LOC120568455
XM_039814666.1 mRNA upstream 163530 33075783 ~ 33126800 (+) True LOC120567698
XM_039815989.1 mRNA upstream 220277 33051009 ~ 33070053 (+) False apol1
XM_039815269.1 mRNA downstream 1608 33292188 ~ 33298786 (+) True atp1b3a
XM_039815127.1 mRNA downstream 65927 33356507 ~ 33365322 (+) False stk25b
XM_039815125.1 mRNA downstream 65928 33356508 ~ 33365322 (+) True stk25b
XM_039816506.1 mRNA downstream 118108 33408688 ~ 33410016 (+) True LOC120568799
XM_039816488.1 mRNA downstream 123495 33414075 ~ 33419694 (+) True cldn18
TU161294 other upstream 124230 33163916 ~ 33166100 (+) True LOC120568463
XR_005640727.1 other upstream 243196 32989790 ~ 33047134 (+) False tep1
TU161084 other upstream 508859 32780988 ~ 32781471 (+) True G119585
TU161083 other upstream 514648 32775074 ~ 32775682 (+) True G119584
TU161081 other upstream 520478 32768707 ~ 32769852 (+) True G119582
TU161343 other downstream 14242 33304822 ~ 33307864 (+) True G119769
unassigned_transcript_564 other downstream 111671 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161565 other downstream 567962 33858542 ~ 33859847 (+) True G119957
TU161681 other downstream 664603 33955183 ~ 33957504 (+) True LOC120568585
TU161769 other downstream 873523 34164103 ~ 34165846 (+) False mrpl34

Expression Profile