RNA id: TU161570


Basic Information

Item Value
RNA id TU161570
length 232
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G119961
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33867769 ~ 33868000 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaaaaaatacattaaaaattcCACATCACAAATACAAGGTACCAAGTTAGTGCTTCAATGGCTGGGACTTGACCTCCAGGGCCCTCAGCCTCACCTCCAGGCCCGTTGGGTtaggaaccggagggtcgctggttcaagtccccgtacggaccgaagtacggagtgtggactggtagctggagaggtgccagttcacctcctgggcactgccaaggtgctcttgagcaaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640825.1 lncRNA upstream 773 33861438 ~ 33866996 (+) True LOC120569016
TU161561 lncRNA upstream 15832 33811076 ~ 33851937 (+) True gng12a
TU161526 lncRNA upstream 269112 33597873 ~ 33598657 (+) True G119922
TU161502 lncRNA upstream 305698 33538172 ~ 33562071 (+) True G119901
TU161485 lncRNA upstream 352346 33514011 ~ 33515423 (+) False pkn2a
TU161572 lncRNA downstream 386 33868386 ~ 33868686 (+) True G119963
TU161693 lncRNA downstream 107828 33975828 ~ 33976887 (+) True G120058
TU161694 lncRNA downstream 114997 33982997 ~ 33983403 (+) True G120059
TU161697 lncRNA downstream 119432 33987432 ~ 33987907 (+) True G120062
TU161705 lncRNA downstream 144678 34012678 ~ 34012883 (+) True G120069
XM_039815082.1 mRNA upstream 16413 33810968 ~ 33851356 (+) False gng12a
XM_039815083.1 mRNA upstream 16413 33810968 ~ 33851356 (+) False gng12a
XM_039815084.1 mRNA upstream 16413 33811246 ~ 33851356 (+) False gng12a
XM_039815080.1 mRNA upstream 58093 33768879 ~ 33809676 (+) True wls
XM_039816183.1 mRNA downstream 61067 33929067 ~ 33938778 (+) False dmbx1a
XM_039816181.1 mRNA downstream 61067 33929067 ~ 33938778 (+) True dmbx1a
XM_039816182.1 mRNA downstream 61067 33929067 ~ 33938778 (+) False dmbx1a
XM_039816185.1 mRNA downstream 87166 33955166 ~ 33957389 (+) False LOC120568585
XM_039816302.1 mRNA downstream 136895 34004895 ~ 34007251 (+) True ptger4c
TU161565 other upstream 7922 33858542 ~ 33859847 (+) True G119957
unassigned_transcript_564 other upstream 465447 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161343 other upstream 559905 33304822 ~ 33307864 (+) True G119769
TU161294 other upstream 701669 33163916 ~ 33166100 (+) True LOC120568463
XR_005640727.1 other upstream 820635 32989790 ~ 33047134 (+) False tep1
TU161681 other downstream 87183 33955183 ~ 33957504 (+) True LOC120568585
TU161769 other downstream 296103 34164103 ~ 34165846 (+) False mrpl34
TU161873 other downstream 449148 34317148 ~ 34317766 (+) True G120200
TU161901 other downstream 532801 34400801 ~ 34404001 (+) False rps28
TU161934 other downstream 585722 34453722 ~ 34457611 (+) True G120249

Expression Profile