RNA id: TU161584


Basic Information

Item Value
RNA id TU161584
length 864
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G119973
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33600970 ~ 33611387 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GattaatgaaaaataattttatttttgactttCAGTACACAAAACATTAGCTACTGTAAATGGCAGCCACTTGCTTTGTTTCTCCCTTTGTGACAAAATCCAAAGTAGAGTGAGGCAGACGTGTTTTAgggttttaaattaaattactttCCCTTGTGACAAGACCCAGTTTACACTAACCAGAGTATTTAAAAGGTGCTCCAAGCGATGTCACGcggttttttaggctacaacatttttttgtcacatacagcaaacatctcactatccgtgagctgcctgtcccctgaacacactgtaaaaaactaaataaatcacagtctctgtagacagcccaggctccacaaatggcaacaaaaacaatctgcgccaacctgcaccacgaaacagagttccagccaataaccaacaagaaggattttggggtggggggggcgagCTAGTCTCGTTTTATTTGAAAATGCTTTGAACGTCAAGaggtaacgtcacccaacatcgcttagagcacctttaaagtgtTAAACACaaggtttttcctttttttaaaagaactCAAGTTTTCTTAGCTTCTCTTTTGGTCTTCGAAGTGAAAAAGTACtgtgtaaaaaaaaagagggaagggGTTTATCAGTTAAAAAAGTGTATTCCACTTTTATTATGTGCTAGGGAAGAACATTGTTATAAGTGAAAATAAAAGCCTTTTCCTCCACCTTCTGTTGACAGATGAGCTGGTGTTGGATGGGAAGCTCATTGTTGAGAAGAAACCAAAACCTCTTGGAAGTGTGGTCACGTGGGTCACAGTCTGCTTTGGGAGATTTTCGGGTGTATTTACTGTGATCTCTTCACTGAATATGCTTGGTCTCT

Function

GO:

id name namespace
GO:0043570 maintenance of DNA repeat elements biological_process
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko03430 Mismatch repair
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161517 lncRNA downstream 44958 33555584 ~ 33556012 (-) True G119916
TU161496 lncRNA downstream 82814 33517176 ~ 33518156 (-) True G119896
TU161495 lncRNA downstream 84812 33515793 ~ 33516158 (-) True G119895
TU161481 lncRNA downstream 101017 33499634 ~ 33499953 (-) True G119881
TU161469 lncRNA downstream 167074 33421389 ~ 33433896 (-) True selenof
TU161593 lncRNA upstream 24964 33636351 ~ 33684690 (-) True G119982
TU161596 lncRNA upstream 28225 33639612 ~ 33643648 (-) True G119983
TU161601 lncRNA upstream 33897 33645284 ~ 33646385 (-) False gfi1aa
TU161608 lncRNA upstream 47955 33659342 ~ 33662533 (-) True G119990
XR_005640786.1 lncRNA upstream 104006 33715393 ~ 33718251 (-) True LOC120568796
XM_039816905.1 mRNA downstream 23128 33561200 ~ 33577842 (-) False znf644a
XM_039816904.1 mRNA downstream 23128 33561200 ~ 33577842 (-) True znf644a
XM_039815356.1 mRNA downstream 68258 33520706 ~ 33532712 (-) True gtf2b
XM_039815453.1 mRNA downstream 167045 33421691 ~ 33433925 (-) False selenof
XM_039814667.1 mRNA downstream 199647 33385763 ~ 33401323 (-) True LOC120567699
XM_039816913.1 mRNA upstream 226 33611613 ~ 33622422 (-) False glmna
XM_039816911.1 mRNA upstream 226 33611613 ~ 33622420 (-) True glmna
XM_039816914.1 mRNA upstream 226 33611613 ~ 33622288 (-) False glmna
XM_039816912.1 mRNA upstream 226 33611613 ~ 33622258 (-) False glmna
XM_039816916.1 mRNA upstream 33708 33645095 ~ 33649517 (-) False gfi1aa
XR_005640728.1 other downstream 344034 33219724 ~ 33256936 (-) False LOC120568437
TU161146 other downstream 748573 32849719 ~ 32852397 (-) True G119631
TU161133 other downstream 768477 32828385 ~ 32832493 (-) False LOC120567697
TU161092 other downstream 835819 32762447 ~ 32765151 (-) False fcer1gl
TU161606 other upstream 42915 33654302 ~ 33659276 (-) True G119989
unassigned_transcript_565 other upstream 573629 34185016 ~ 34185088 (-) True trnak-cuu_2
TU161838 other upstream 617239 34228626 ~ 34229050 (-) True G120168
TU161906 other upstream 789436 34400823 ~ 34404013 (-) False G120230
unassigned_transcript_566 other upstream 1157054 34768441 ~ 34768514 (-) True trnan-guu_9

Expression Profile