RNA id: TU161645


Basic Information

Item Value
RNA id TU161645
length 2188
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G120016
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33737498 ~ 33767779 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttgaagTACTGGAAGTTTTATTTAAAAGCCATCCATGTGAGCATTTTAGGGTCAAGTAATAAAGACAACAGGCACATGTACATACAGCTGTAAGCCTTTTAAAATTCACAAGCACAGAATATGATGCATGTAATAAAATGCAGCATGCAACTTCTAAGAAGTGTACCACATTCCCAATGATAAAACTCAACACATAGTTATAGAGTAAACAGTTTCTGTCTAAAATactattttggaaaaaaatagacTGAAGACAGGCAGCGAGGAAAGCATGATGGTGTCTTCTGAACtgaaagagagcagagagaaacagaggatATCTCCATGTGTGTGAAATGGCTTCTATTCCTATTTCCTGAACGTATGAGGGGCTTAGATAAAGACGTAAAGGCGACAAGCCGTTGGATGCAACAGATCAATAAACCACTTCTATCAAATTAAGATAATGTTGCTACAGGAAGTCATCTGACTACTGATGTGATGAATTCTTTTTATGAAGTCCGATGTGCTGCACCGTGACCAAGGCATAGAGGCAGCCCTTCAACCTGATAGCAGTGATAACATTGGTTTTGGCACTTAGGGATTGGAATTAAGATAAACAAAATGGCAATAGCAGTTGCTGGACAGGTAAGGAGTCAGACTGGTAGGAAGAGCCTTTAGTTTTGTGCTCAGAAACGAGCACGGATTTTGTCCAATGGACACCCATCCCACATATTGGAATCCCAGGCCTGGAACCAGCCAGTGAAAGTTGGAGGCTCTGCTCCCTGTTTGATGGTGGTGATGGGCAGTCCTTTGCGGCCAGATGGGTCGGAGTCCACATAGTCTTTTGCTAATTTGGGAGCCCCAGTCTTTTCCTCTGCATTAGCTTCGTTGCCAACCCAAAGGAAGATCTGGTCCCAGGTATCCAGGAGCATGACATCATCAGTGGCCAGGTCTGACTGAGTGAAGTCCCCTGGTACTTCTTCAACAATAAGTCTTCCAGTTTTGTTGGAGCAGCCAAACAGACGTGGGGGATGGGCCACGCTCTGCAGACTCTTGGAGGTCTGATATTCTTTTTTGCCACCAAGAGCAGTCCAGAAATCACCTGGGAGAGAAGAAAACACAACGTCCATCGGCTCCAAGTTTGTCCCATATTTggtgcttttgtttgtttgaacgGGAAGTTCTCCACAAAAGAATGATGCCGCTGTTCTTTGGGCCAGTCAGTGACGAGATGCATCAAGATTTCAAGTTGAATCAAAACCAGACCAGAAACCCAGCAGTTACGGTCTATCAATTCGATCAGGCATTGGGCCTATGACTTTGTGCTCCATCTTCATGGCAACATACAGAATGTAGCAATAAGACTTGACTGCGTTGCAGTTACGGCCTTTTACTTTTAGCTTTTAAAGTCTTCATGAGGACAATTAGTggcattttttaaacaacataacaGAGTTGAGCTGCTTTTAATCCTCAAAGTTCTgtcacttaagtaaagtacaactgATTACATATAACTTTTGGCTTTGAACTACTGCAcaggctagtctatatccacgagttgtctgttgcacgactaaaacaacctttgaacgtacactattttgcagcggcaccgtggctctgagAGAGTTTTGTAGAGGTGAtgggcttaattagctttgtatcaactcattttgCAATAGCTTTAATGTAACGGGCATttataaaatatagaatagttgcgcactatagctttaagtaacAACCTTTTATTACATACAGCATATTGGTCCTCAGGGGACACTCACCTGACTCTTTGCCCTCTGACACTTGGGTGGCACTGCCACCCAGGAAGTCCACCACATGCTTGGAAGCCCCCACCTCCTCATCACTGGCACCCACTCCCCGCCACACAAACAAGGCCTTTGGGGTCTTCAGCACAAACACGTCGTTGGTGTTCAGTTTGGAAGCAGAGACCTCGACCTGGGGGGGGACACATGTAGACAGGTAAGAGGGGAAATCAAGGAtgacaactagggctgggtatcgttcataAAATGTTGATGCCGGTACCGATGCCAATATGGTAACTGcaataccggttcctaaacgatactttttttcgataccaatattataaaaaaaaaaagaaattacaacattacacattcatttttcagctcctactacgtgagcctgTCTCTGTGCGTGCCATAGAGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640786.1 lncRNA downstream 44510 33715393 ~ 33718251 (-) True LOC120568796
TU161593 lncRNA downstream 78071 33636351 ~ 33684690 (-) True G119982
TU161666 lncRNA upstream 40741 33808520 ~ 33823583 (-) True G120034
TU161672 lncRNA upstream 63024 33830803 ~ 33853674 (-) False G120039
TU161673 lncRNA upstream 79217 33846996 ~ 33853674 (-) True G120039
TU161686 lncRNA upstream 180741 33948520 ~ 33949194 (-) True G120052
TU161740 lncRNA upstream 270131 34037910 ~ 34038115 (-) True G120096
XM_039816858.1 mRNA downstream 82974 33664713 ~ 33679787 (-) True dipk1aa
XM_039816916.1 mRNA downstream 113244 33645095 ~ 33649517 (-) False gfi1aa
XM_039816917.1 mRNA downstream 114397 33645095 ~ 33648364 (-) False gfi1aa
XM_039816915.1 mRNA downstream 114397 33645095 ~ 33648364 (-) True gfi1aa
XM_039816912.1 mRNA downstream 140503 33611613 ~ 33622258 (-) False glmna
XM_039816820.1 mRNA upstream 90791 33858570 ~ 33861288 (-) True gadd45aa
XM_039816184.1 mRNA upstream 181817 33949596 ~ 33955044 (-) True nsun4
XM_039816187.1 mRNA upstream 190240 33958019 ~ 33976815 (-) True pif1
XM_039816188.1 mRNA upstream 190240 33958019 ~ 33976809 (-) False pif1
XM_039814539.1 mRNA upstream 241112 34008891 ~ 34034308 (-) False LOC120567625
TU161606 other downstream 103485 33654302 ~ 33659276 (-) True G119989
XR_005640728.1 other downstream 505825 33219724 ~ 33256936 (-) False LOC120568437
TU161146 other downstream 910364 32849719 ~ 32852397 (-) True G119631
TU161133 other downstream 930268 32828385 ~ 32832493 (-) False LOC120567697
TU161094 other downstream 997685 32762447 ~ 32765076 (-) False fcer1gl
unassigned_transcript_565 other upstream 417237 34185016 ~ 34185088 (-) True trnak-cuu_2
TU161838 other upstream 460847 34228626 ~ 34229050 (-) True G120168
TU161906 other upstream 633044 34400823 ~ 34404013 (-) False G120230
unassigned_transcript_566 other upstream 1000662 34768441 ~ 34768514 (-) True trnan-guu_9
TU162119 other upstream 1127800 34895579 ~ 34895913 (-) True G120390

Expression Profile