RNA id: TU161672


Basic Information

Item Value
RNA id TU161672
length 1210
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G120039
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33830803 ~ 33853674 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTCTGACTGTGCAGCACAACACATCTTTATTGAGATATTTGGACAGTGTTGGACCGTAGGAATGCTTCACTTTATTAATCTTAGTTAAGTCTTCATACAAAGGTTGGTATATTAATAAAGACATTTATCAAAATGCAGATTTTTGACAGTTAAATGAATCTTTCAATGGAACAATAAAGGATGTTACACAGTTGCTGAATGGACAGAAATCATGACATGGCAGTAGCATTCTCAACTTTTCCTTAAGAGGCATACAGGAGTGATTTATTGCAAGTAAGAAGAAACCGACTGGAAAAAAATACAACTGGATAACAAACACCGGATCTCGCTGATTTGAAGACCTGAAAGTATCCTTTGGAGAAGGCAACTGAAAAGCAGAGCACCAGGTAAGTGAAACACGATCTAACATGTTTTGCTCGTGACACGTAGACAGAAACAGATGGCACAATATTGTTACAAATCACTTTCATCCCACAGataaaaacatttgattgaactatcgttcttttttttcttttttttaatagccgagacacaccaaccagacggccgaccgtcgacagaaaagccagtcggaatgatcagtcgggtccccgaggtcgaaaaaagtgcctcggaacacactgaggtgacaccgacttgagaaacgtaatacgtctccatagcagcaggcggcgctactctgtactgttgcccaagaaatgaaaaccggcagctgattggacgaacgcgtcacatgggtttgttttctccggaaattcaaagccaggctgtcatggcggctcgttcagaatacgatctcgtattgtactaagatagttcaccgaaatgtgtttctgaaaacattttaagcgagaaataggccgtgcagttgctgaatctgtcagtcaggtcagtttaaaagattttcgtcagattttgagagactctagtcacactcatcatttccaggtgagtcccgactgccctgtctccgactgaacatgtcaggttggccaaaatgaaggccgacagcccctcagacggacgacggcacgggacacaccgaacagactcgagtcaccgacctcgccagactgtccaacggccgattatcggcttggtgtgtcttcGGGCTTTAAGGTACTCCCAGTTAGAATATTCTTCATGATACAAGGCAAACATAAGTAAGGCTTTAGattgtaaaattaaaaaaaaaagtcttcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161666 lncRNA downstream 7220 33808520 ~ 33823583 (-) True G120034
TU161644 lncRNA downstream 63024 33737498 ~ 33767779 (-) False G120016
TU161645 lncRNA downstream 63024 33762761 ~ 33767779 (-) True G120016
TU161643 lncRNA downstream 63024 33764967 ~ 33767779 (-) False G120016
XR_005640786.1 lncRNA downstream 112552 33715393 ~ 33718251 (-) True LOC120568796
TU161686 lncRNA upstream 94846 33948520 ~ 33949194 (-) True G120052
TU161740 lncRNA upstream 184236 34037910 ~ 34038115 (-) True G120096
TU161811 lncRNA upstream 353842 34207516 ~ 34207796 (-) True G120150
TU161836 lncRNA upstream 372344 34226018 ~ 34227413 (-) True G120166
TU161843 lncRNA upstream 380832 34234506 ~ 34234711 (-) True G120173
XM_039816858.1 mRNA downstream 151016 33664713 ~ 33679787 (-) True dipk1aa
XM_039816916.1 mRNA downstream 181286 33645095 ~ 33649517 (-) False gfi1aa
XM_039816917.1 mRNA downstream 182439 33645095 ~ 33648364 (-) False gfi1aa
XM_039816915.1 mRNA downstream 182439 33645095 ~ 33648364 (-) True gfi1aa
XM_039816912.1 mRNA downstream 208545 33611613 ~ 33622258 (-) False glmna
XM_039816820.1 mRNA upstream 4896 33858570 ~ 33861288 (-) True gadd45aa
XM_039816184.1 mRNA upstream 95922 33949596 ~ 33955044 (-) True nsun4
XM_039816187.1 mRNA upstream 104345 33958019 ~ 33976815 (-) True pif1
XM_039816188.1 mRNA upstream 104345 33958019 ~ 33976809 (-) False pif1
XM_039814539.1 mRNA upstream 155217 34008891 ~ 34034308 (-) False LOC120567625
TU161606 other downstream 171527 33654302 ~ 33659276 (-) True G119989
XR_005640728.1 other downstream 573867 33219724 ~ 33256936 (-) False LOC120568437
TU161146 other downstream 978406 32849719 ~ 32852397 (-) True G119631
TU161133 other downstream 998310 32828385 ~ 32832493 (-) False LOC120567697
TU161094 other downstream 1065727 32762447 ~ 32765076 (-) False fcer1gl
unassigned_transcript_565 other upstream 331342 34185016 ~ 34185088 (-) True trnak-cuu_2
TU161838 other upstream 374952 34228626 ~ 34229050 (-) True G120168
TU161906 other upstream 547149 34400823 ~ 34404013 (-) False G120230
unassigned_transcript_566 other upstream 914767 34768441 ~ 34768514 (-) True trnan-guu_9
TU162119 other upstream 1041905 34895579 ~ 34895913 (-) True G120390

Expression Profile