RNA id: XM_039816185.1


Basic Information

Item Value
RNA id XM_039816185.1
length 794
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC120568585
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33955166 ~ 33957504 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTCGTCGTTTCCTGCGCGTGAACGACCCCACGTCCTCGAAAACAGTGCTGCTGAGGAGCTTGGACTTCTGTCCTCTGTGTGGGTTTTGGGCAATTTTCAGAGCCGCAATCATGGTTTTCGAGAGGAAGATGATCACGTACGACGACCCCGAAGAGGAGGAGGAAAAtgctgaggaggaagaggaggaagaagagcaaGACATGGTGGACCCTCTAGAAACAATACGAGCCAAGTGTGAGCAGACTGAACACTGTGTGCACACCAAGGAGCGTCTGGAGACATGTGAAGCCCGAGTCGGCTCCCGATCCAACACTGCTGAAGAATGCACAGAAGAACTCTTCGACTTCCTGCATGCACGGGAccattgtGTGGCGCACAAGCTGTTCCACCATGTGAAATAACCTGCCTGCTCAGCTCCCTCCACTTGCAGCTGTAGACTATTTAACTGCTAAAATTTGTAAAATAATCAGGACTATTCTGTTCTTCTGTGTATTAGTGTAAATGAAGTGTATTGGGTTCCTTGACTAAATACATGCCACTTTTCCTGTATACTGTGCATACTTGTGTTGACTGGGTCAGGAGCAGTATGTAGAATATGAGTCACTGCTTGGATATGTTAAGAAGTGAATCATAGATGTTGAAGGATGTGCAACGAAGGGAATCAAACTATCAATTCTCACTGGTCAGTTCAGAAGCAAGAGCAAACATGCTGCTCTGGCAATGCAGTTTACCTCAGGTTTGGTCATGGACTCCTCACTAACTCGAAAATAAAGGGTTTTTTGGTGTTCAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640826.1 lncRNA upstream 84382 33867395 ~ 33870784 (+) True LOC120569017
TU161572 lncRNA upstream 86480 33868386 ~ 33868686 (+) True G119963
TU161570 lncRNA upstream 87166 33867769 ~ 33868000 (+) True G119961
XR_005640825.1 lncRNA upstream 88170 33861438 ~ 33866996 (+) True LOC120569016
TU161561 lncRNA upstream 103229 33811076 ~ 33851937 (+) True gng12a
TU161693 lncRNA downstream 18439 33975828 ~ 33976887 (+) True G120058
TU161694 lncRNA downstream 25608 33982997 ~ 33983403 (+) True G120059
TU161697 lncRNA downstream 30043 33987432 ~ 33987907 (+) True G120062
TU161705 lncRNA downstream 55289 34012678 ~ 34012883 (+) True G120069
TU161700 lncRNA downstream 85163 34042552 ~ 34111347 (+) True G120064
XM_039816183.1 mRNA upstream 16388 33929067 ~ 33938778 (+) False dmbx1a
XM_039816181.1 mRNA upstream 16388 33929067 ~ 33938778 (+) True dmbx1a
XM_039816182.1 mRNA upstream 16388 33929067 ~ 33938778 (+) False dmbx1a
XM_039815082.1 mRNA upstream 103810 33810968 ~ 33851356 (+) False gng12a
XM_039815083.1 mRNA upstream 103810 33810968 ~ 33851356 (+) False gng12a
XM_039816302.1 mRNA downstream 47506 34004895 ~ 34007251 (+) True ptger4c
XM_039816714.1 mRNA downstream 206691 34164080 ~ 34165852 (+) True mrpl34
XM_039816715.1 mRNA downstream 209587 34166976 ~ 34169919 (+) False LOC120568953
XM_039816872.1 mRNA downstream 286449 34243838 ~ 34253143 (+) True nr2f6a
XM_039816873.1 mRNA downstream 286449 34243838 ~ 34253143 (+) False nr2f6a
TU161565 other upstream 95319 33858542 ~ 33859847 (+) True G119957
unassigned_transcript_564 other upstream 552844 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161343 other upstream 647302 33304822 ~ 33307864 (+) True G119769
TU161294 other upstream 789066 33163916 ~ 33166100 (+) True LOC120568463
XR_005640727.1 other upstream 908032 32989790 ~ 33047134 (+) False tep1
TU161769 other downstream 206714 34164103 ~ 34165846 (+) False mrpl34
TU161873 other downstream 359759 34317148 ~ 34317766 (+) True G120200
TU161901 other downstream 443412 34400801 ~ 34404001 (+) False rps28
TU161934 other downstream 496333 34453722 ~ 34457611 (+) True G120249
unassigned_transcript_567 other downstream 814685 34772074 ~ 34772146 (+) True trnar-ccu_3

Expression Profile