RNA id: TU161694


Basic Information

Item Value
RNA id TU161694
length 407
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G120059
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33982997 ~ 33983403 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTAATCTTAATGCAGCTATCAGGCTGGACATACGTAAAAAACATCTCATGTGACGATATTTCCTTTATGCATATGCATTTACCATCTAACATACAATCTAACAGCTCAGTTCATCACTAGGTCAATGCagccatctttctctctcctgtgtgcATCTAGGGCCTCACTGGACACGTCCTCTTTCCAGCTGCAGGTTCAAGCAGCCAGTTACACAATACAACTTATCCATCTGAGGCCTCTTGCAAATACTTCCTCTCTACGGCTGAAGCGTCAAACAGGCAGTTACACACAGTAATTCACACTAAGATGTGTCTAACCATGTTTATAATAATATCAGTAACACAACGTTTAGCATGATTATATTTCTAAGCAATCATATAGTTTTAGAAGCGAATCAACACTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161693 lncRNA upstream 6110 33975828 ~ 33976887 (+) True G120058
XR_005640826.1 lncRNA upstream 112213 33867395 ~ 33870784 (+) True LOC120569017
TU161572 lncRNA upstream 114311 33868386 ~ 33868686 (+) True G119963
TU161570 lncRNA upstream 114997 33867769 ~ 33868000 (+) True G119961
XR_005640825.1 lncRNA upstream 116001 33861438 ~ 33866996 (+) True LOC120569016
TU161697 lncRNA downstream 4029 33987432 ~ 33987907 (+) True G120062
TU161705 lncRNA downstream 29275 34012678 ~ 34012883 (+) True G120069
TU161700 lncRNA downstream 59149 34042552 ~ 34111347 (+) True G120064
TU161767 lncRNA downstream 161023 34144426 ~ 34146446 (+) True G120120
TU161773 lncRNA downstream 170516 34153919 ~ 34157980 (+) True G120125
XM_039816185.1 mRNA upstream 25608 33955166 ~ 33957389 (+) False LOC120568585
XM_039816183.1 mRNA upstream 44219 33929067 ~ 33938778 (+) False dmbx1a
XM_039816181.1 mRNA upstream 44219 33929067 ~ 33938778 (+) True dmbx1a
XM_039816182.1 mRNA upstream 44219 33929067 ~ 33938778 (+) False dmbx1a
XM_039815084.1 mRNA upstream 131641 33811246 ~ 33851356 (+) False gng12a
XM_039816302.1 mRNA downstream 21492 34004895 ~ 34007251 (+) True ptger4c
XM_039816714.1 mRNA downstream 180677 34164080 ~ 34165852 (+) True mrpl34
XM_039816715.1 mRNA downstream 183573 34166976 ~ 34169919 (+) False LOC120568953
XM_039816872.1 mRNA downstream 260435 34243838 ~ 34253143 (+) True nr2f6a
XM_039816873.1 mRNA downstream 260435 34243838 ~ 34253143 (+) False nr2f6a
TU161681 other upstream 25493 33955183 ~ 33957504 (+) True LOC120568585
TU161565 other upstream 123150 33858542 ~ 33859847 (+) True G119957
unassigned_transcript_564 other upstream 580675 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161343 other upstream 675133 33304822 ~ 33307864 (+) True G119769
TU161294 other upstream 816897 33163916 ~ 33166100 (+) True LOC120568463
TU161769 other downstream 180700 34164103 ~ 34165846 (+) False mrpl34
TU161873 other downstream 333745 34317148 ~ 34317766 (+) True G120200
TU161901 other downstream 417398 34400801 ~ 34404001 (+) False rps28
TU161934 other downstream 470319 34453722 ~ 34457611 (+) True G120249
unassigned_transcript_567 other downstream 788671 34772074 ~ 34772146 (+) True trnar-ccu_3

Expression Profile