RNA id: TU161767


Basic Information

Item Value
RNA id TU161767
length 1288
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G120120
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34144426 ~ 34146446 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tTTCGCTTGTTGTTCTTGGGGGCCTCCATCTGGGTTTTGGACAGCTCTTTGAGttgtgtttgagtctgagaggaagcagacgtgctGGTGGGCTTAACTTCAGGCTTCTGCACTTCTGCCTGAGCCTCAACAGGCATAGACATTTTAGGTTTGTCCATCTTTTGGTCCTGCTCCACAAGACTCGGTGCTTCGGACTTAATCGGTAGTGCTTTGGTAAGAAGAATCTTGGATTGTGGCTGTGGCTCCGTCCTTTCACAGCTTGGGGCCTGAGGCGAGgactgagcctgtgtgtgtgacggTGTACAGGTTTTGTGCTGGAGATGACGGGGTTGATGCTCTCTGGCATAGCTGTGCACCTGCAGCTGTGTGCGAGGCTGCTGCTGCCTTTCTAGCGTATAGCTGTGCACTTGAAGAGTGTCTTTTGGGCTCAGAGTCCTGTGGAAGAGCAGGCTGGCTACCCCCATTTTGCGGACAGGCTGAGCCTTGATTTCCGTCCACGAAGGTGCAGCGGAAACTGATAGATGTCCGTTTCTGGGCAGGGACTGAGACGAGATAGCAGGGGCGCGAGTCTTAGTATAATGTGGGGGGCGTCCTACATCACTGACACTTTGGGTCAAGCCCCTATGAAATGGATCCAATAAAGTGAGCTTGGTTGGTGTGACAACCAACTTCGGTGGGCCTGTATTCTTTTGCCCTCTTGTAAAATGGCGCGTGGAGGTATAAGGCTGAGCCGGGGACGCTTCCCATACTGCTCCACATCTTCATCTTTGGGAACAACCTCCTTAGGCACCTCCAGGCACACTCGGTGTCTCTTGGTCTCTATCCTCTGTGTAGTGCTGTGGAccaaacagagacacaggcagaaccccatctgtttttttctgttgctgtGAGATGAAACCTTggtgtatacagtacaggccaaaagtttggacacaccttctcattcaatgtgtttcctttattttcatgactatttacattgtagattctcactgaaggcatcaaaactacgaatgaacacatatggaattatgtacttaacaaaaaagtgtgaaataactgaaaacatgtcttatattttagattcctcaaagtagccaccctttgctttttttgataactctgcaaacccttggtgttttctcaatgagcttcatgaggtagtcaccgaaatggttttaccttcacaggtgtgctttgtcagggttaatcagtggaatgttttcccttattaataaaaaaagcaaagggtggctactttgaagaatctaaaatataagacatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161700 lncRNA upstream 33079 34042552 ~ 34111347 (+) True G120064
TU161705 lncRNA upstream 131543 34012678 ~ 34012883 (+) True G120069
TU161697 lncRNA upstream 156519 33987432 ~ 33987907 (+) True G120062
TU161694 lncRNA upstream 161023 33982997 ~ 33983403 (+) True G120059
TU161693 lncRNA upstream 167539 33975828 ~ 33976887 (+) True G120058
TU161773 lncRNA downstream 7473 34153919 ~ 34157980 (+) True G120125
TU161770 lncRNA downstream 20565 34167011 ~ 34172309 (+) True LOC120568953
TU161872 lncRNA downstream 166343 34312789 ~ 34313388 (+) True G120199
XR_005640799.1 lncRNA downstream 202834 34349280 ~ 34377895 (+) True LOC120568876
TU161878 lncRNA downstream 202845 34349291 ~ 34377888 (+) False LOC120568876
XM_039816302.1 mRNA upstream 137175 34004895 ~ 34007251 (+) True ptger4c
XM_039816185.1 mRNA upstream 187037 33955166 ~ 33957389 (+) False LOC120568585
XM_039816183.1 mRNA upstream 205648 33929067 ~ 33938778 (+) False dmbx1a
XM_039816714.1 mRNA downstream 17634 34164080 ~ 34165852 (+) True mrpl34
XM_039816715.1 mRNA downstream 20530 34166976 ~ 34169919 (+) False LOC120568953
XM_039816872.1 mRNA downstream 97392 34243838 ~ 34253143 (+) True nr2f6a
XM_039816873.1 mRNA downstream 97392 34243838 ~ 34253143 (+) False nr2f6a
XM_039816045.1 mRNA downstream 254302 34400748 ~ 34404001 (+) True rps28
TU161681 other upstream 186922 33955183 ~ 33957504 (+) True LOC120568585
TU161565 other upstream 284579 33858542 ~ 33859847 (+) True G119957
unassigned_transcript_564 other upstream 742104 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161343 other upstream 836562 33304822 ~ 33307864 (+) True G119769
TU161294 other upstream 978326 33163916 ~ 33166100 (+) True LOC120568463
TU161769 other downstream 17657 34164103 ~ 34165846 (+) False mrpl34
TU161873 other downstream 170702 34317148 ~ 34317766 (+) True G120200
TU161901 other downstream 254355 34400801 ~ 34404001 (+) False rps28
TU161934 other downstream 307276 34453722 ~ 34457611 (+) True G120249
unassigned_transcript_567 other downstream 625628 34772074 ~ 34772146 (+) True trnar-ccu_3

Expression Profile