RNA id: TU161773


Basic Information

Item Value
RNA id TU161773
length 3900
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G120125
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34153919 ~ 34157980 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTGTGAACATCGGTTTTATTTTATGCCAGGAAAGGCACATTAATACACTGAATCCAACTGTTTTGACAGGCTATATAATGTTATATGCATCTACATCCAGGCAGTGCATATATTATGATTCCCACGCATAAATGCAACAATAACATTAACACATTTTGTTAACCACAAAAGGATATAGCACATATGAGTACTGACAATTTGTATATGCACACTTTTAGCATAAGAGGAAGTACATGTGCACCAGGTAGTCCATACAGTTTCACTGACCTTTCACACAGGAAGGAGACATATTCAGCAGCACTTTTTGGTTTTTGGAAAGTCCATAGAGAATATATAATGTTTCTAGATATCAGTGCCACGTACGTTTATTTCCACTCTATTTCTCTCTATGTTGTTCCAGTTGCATAAGACCAGTCATGTTGCATCAGCATCCTGTCAaaatgcatatacagtacatataacaGACCAGCATGTTCAGTACAAATGTCCCTCTTCTTAGGGGGCTTTCTCCTTTAGCTGAATCATATTTGATTTTAAGCTTTGGAAACCCAGTCTCAAATCCACCAATTTACACATTTTGCCTCTCAAAACAGTCTAAACTATCCAGTCAACAGATACACACTGTAAGAGAGCATATTATAAGACTGTGCTTTTACTCGCACCTTTCTGTCCCAACCATGAGACGAAGCAGCACCCATGAATGAATATCTTTCAGTGAGCACAATGTTCAGCTCATTCTTTCTGTCTAACACTATAAGATAAATAGGATGGACTGGAGTTGGGGAACACACCCAGCAGCTTAAAGTGGTCAATACAACCACAATTTGTTATGGCAGTTTCTgtttcaaaataataataataataagaataataataaaggcAAAATAATACTTACACATTAAAAGGAATTTGATTAGAGAGAAGTGCACAgggaattcaattcaattttcaaaatATATTGCAACTGTCCGACACAACCCTCATAGCTTTTAAAATTCTGCATGGCCTCGGTACTTTGTATCCTCAGTATATCATATACTATAGCAGAAATAGCTGCTAGAATAAAGTAGGAGAGTTTTTTTTGGCATCCATGTTTGTTAACATCTGTTTTGCACCCAGTTCCCATAAATCTCTCATTGAATATTACTTAACTTTCATGCAATTATGAATTGATGATTTGGTTACATTGTGCTTAACATAGACATACCTAGCTTTTGGGATTTATGTCTTGTTTTAGAGTTCAATATATGGTAAATATATTGTTGTAATTTGGAAATAGATGAGCCAATTTGATTGGCAATGGCTGTGATTGTTTGAGATGGTGTACACTGCACATTGTATGGATGTGGTTACTAAGTCAACAATAAATtgttgtgtttctccttctggCACAATGTAATTTACATATGCATGTGGTGCAATTATTAGTTACATTTTGCATGTACATTGGTATATATTTAATGTCTTTAACCCATGTCCAACTACTATCCAGTCAGTGTTTGATAATAAACTATTATTATCAACACTTAAGTTTTATTATAAGCTGTCCTTCGTCATCGTACTGGCAAATCAGATCAATGATTCCTCAATTCCCTACATATCATTTTGCCAGTTTCCCACTTAAAGCAGATGTAGGATGTGCCCAATGATGAGTTAATAACCATTTTGTAAAGGCAGAAAAGAAGCTCTGCAGTACTTGACAGAATATTTAAGGTGAGGGAATTCACACACCATTTCATGGATTTTATACCTTTTTGCATTTTGTAGTAGTCAGTTCATCGCCGGATATATTGCATACAGAAATCACAAATGGACATAGTCCTCCATGTATTGTGTCGTTTTGCAAACACAATGCAATGGAACACAAACGGGTATCAAAAAGCGAAGCTGAAACTGACTGTGTATTTGCATCCATTCCTCTCATCTTTATGTCCGTTCCGTCGTTCTCTGGTCGGCACTGTGCCTAAGTCCTGCTTTATCTTGGCGCACCAGTGGCCGTCCGCATCCTTAAGATGTGGCCCTGTTTATAACAGCTCTCAGCCTGGAAGCAGCCTTTAGAACGCATGCCAAAAAAAGGCCTTCTGCTTGGGTCCGTAACAAAACTAGACCCCTCGTTGGTTATTTGTCCATAGGCTTATTGATTTTCAGTGTGTGGAGAGTGTCACTGAGAGCTGTGTCTGTCTTGCTGCTGTCTTTTCTGGACATGTCAGGCTCCCATAGAAAGAACTCGTGGAGGAGGGTGTTGACGGTGTCTGGGCACTCCATCATGACCATGTGACTTCCCTCCTCAATGACTTTTAGGAATGCAAACAGAAGGATCTAGAAAGGGGAGCCAAAATGAATGCGGCACATTACGATATGTACTACAGTGAAAACGCGTCATTTCAAATGAAACATCACGTGATAAATCAGCACTCATTCACGCATGGAGATGCACTTTACCTCTGCCATGCGCTGGTCCTCATCCATTGGCACGAACTTGTCACACATGCCATGAACCAGAAGGATGGGCACAGTGAGCTCGGCATGGTAGACCTCATCCCCCTCTGGCCAGTACTGGCCACTCATCATGGCTCGCAGGACAAATGGAGACACGTTGAAGGCATTGCCCTGCTTCAACAGCTGCTTTTCTTTGGCACCCTGACGGGCAAATCCAGCTCTAAAgATCTTACTTGAGGAAGCTCCAGGCCAGACAGGGTGACAAACAGTGCAGGACACAAGATGGCAGCTGGAAGATGGAGCATAGGCTGGGCTCCAGAGCTGTGGGACCCCCTCCATTGATCATCACCACCTTATGGACCAGATCAGGATATTCATGGGCCAGGAAGGTGCAAAATGATACTCTGCAAGAGATATGATGAGAGCATGTTAACAACAGGATGTTAATCACtactggatggatggatggatggatggatgaatggatggatagatagatagctagatgGATATATGCATGAATgcgtgggtggatggatggataggtgGATAGATAGATGCATGGATGGAGATTTGGTGAGGGATATATAACAAAAGCGTGTCACAGATCCTCACCCATATGAGTGGCCGATGAGTATGTTGCGTTTACGAGCATATCTCTTAAAGATGGCACGAAGGTCCTCTGCTAGGGCATAAAAAGTATAAGCTGCTGCAATCTGTGGGGCAGTACTGGCTCCATGCCCGGCCAGGTCGGGTGCGATAACCTCATAGCCCAGCCGAGAGAAGAAGTCCAGTTGGCTGCCCCAAATGTCCAGAGaacctcccacaccgtgcacgAAGAACAGCGCTACGTCCGAGTGCGTCCCTTTGCAGCTGGAGATCACCCTCTTTGAGTCGATTTGCACCGTGCGCTTGGGCTTGCGACGGCGCCGACGGGGAGGTGGAGCGGGTTTCTGTTCCCCATGAGGTGAAGGAACCAGAGGAGGAACAGGATTGGGGTCTGGAGAAGAGGGCATTTCTTTGTAGTCCGCCAGCTCCACCTCTACAGTGCTGCAAGGCTCCAGGTCCCCATCCTGACACTGCAAGATCTCAGAGTGCAGAACATCACCCAGATTCTCAATCACCAGCTGGCCGTTGCGGTAGACTGTGATCTTCCTCTTGCAGTGGACACTGCTGCCGGTATTGCTCTCGCTACAATCCTCAGGAGGgccgtcatcatcatcatcctcctcctcaccgTCCGTCTTCTCCTTGCATGCAACTTGCTGTTCCGTTACTACGGGCTGACGCTCAGGGATAATGTGCCGCACTCGCAGGACTCTCCCAGGTTTCACCTCCACAAACTCAAAACCGTCAGAGGGTTCTGATGACTCCAGGGGCAAGACCAGACTGGCAGCCTTCCCAGTCAGGCAGCATAGTATCCCTTCAGTGATACTGGTCAGCATGGTGCTTCCCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161767 lncRNA upstream 7473 34144426 ~ 34146446 (+) True G120120
TU161700 lncRNA upstream 42572 34042552 ~ 34111347 (+) True G120064
TU161705 lncRNA upstream 141036 34012678 ~ 34012883 (+) True G120069
TU161697 lncRNA upstream 166012 33987432 ~ 33987907 (+) True G120062
TU161694 lncRNA upstream 170516 33982997 ~ 33983403 (+) True G120059
TU161770 lncRNA downstream 9031 34167011 ~ 34172309 (+) True LOC120568953
TU161872 lncRNA downstream 154809 34312789 ~ 34313388 (+) True G120199
XR_005640799.1 lncRNA downstream 191300 34349280 ~ 34377895 (+) True LOC120568876
TU161878 lncRNA downstream 191311 34349291 ~ 34377888 (+) False LOC120568876
TU161918 lncRNA downstream 275859 34433839 ~ 34435395 (+) True G120237
XM_039816302.1 mRNA upstream 146668 34004895 ~ 34007251 (+) True ptger4c
XM_039816185.1 mRNA upstream 196530 33955166 ~ 33957389 (+) False LOC120568585
XM_039816183.1 mRNA upstream 215141 33929067 ~ 33938778 (+) False dmbx1a
XM_039816714.1 mRNA downstream 6100 34164080 ~ 34165852 (+) True mrpl34
XM_039816715.1 mRNA downstream 8996 34166976 ~ 34169919 (+) False LOC120568953
XM_039816872.1 mRNA downstream 85858 34243838 ~ 34253143 (+) True nr2f6a
XM_039816873.1 mRNA downstream 85858 34243838 ~ 34253143 (+) False nr2f6a
XM_039816045.1 mRNA downstream 242768 34400748 ~ 34404001 (+) True rps28
TU161681 other upstream 196415 33955183 ~ 33957504 (+) True LOC120568585
TU161565 other upstream 294072 33858542 ~ 33859847 (+) True G119957
unassigned_transcript_564 other upstream 751597 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161343 other upstream 846055 33304822 ~ 33307864 (+) True G119769
TU161294 other upstream 987819 33163916 ~ 33166100 (+) True LOC120568463
TU161769 other downstream 6123 34164103 ~ 34165846 (+) False mrpl34
TU161873 other downstream 159168 34317148 ~ 34317766 (+) True G120200
TU161901 other downstream 242821 34400801 ~ 34404001 (+) False rps28
TU161934 other downstream 295742 34453722 ~ 34457611 (+) True G120249
unassigned_transcript_567 other downstream 614094 34772074 ~ 34772146 (+) True trnar-ccu_3

Expression Profile