RNA id: TU161859


Basic Information

Item Value
RNA id TU161859
length 1228
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120569054
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34236416 ~ 34244121 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGTGTAGCTGAGGTTGCGTCTGACGCTCCTCTTGAAGAAGCTCTTGCAGCCCTCGCACGTGAACACGCCGTAATGTTTCCCGCTGGACTTGTCCCCGCACACCACGCAGTCCACCACGCACGACTTGTCGTCGTCTCCGGCCTCCATGTCGCTGCCTCCCGCCTGGGGAGAGCcgtcttcctcctcccccctcagGTAGCTCTTGTCCCCCAGCCCGTTGGTGCCCCCATTGGGATCTCCCCAGCCCCCACTCACCATGGCCATCGCTTGGTTACCGAACCACGGCAGAAGAAAACCGGACAGGCAGCCAAGATGTGTGGCTGCTGTCAAGccatttgaagtcacttctATTTCTGGTTTTCCGGTGTTACACACACCTGTCGGGTCTTCTCGCACCGCCAGCACTTCATGATGGATGAAACcttctgaaaataaaaatgtcgcCAACAGCTTGTGACTGGAGCAGCATCGTCCCTCTGATGTTTCCGGAGTACTAAGAAGACAATGTCATTGTCCAGACGTTGTCTTTGTTCAGCTGGCAGTTTCTTGCTTTTTTGGGGTGAAAAGTCTCcctgttttgttgttgataaGAGGGAAAGAATTAACAAGTCGTGGCTGTAATTTGAAACCCTTTTTTTGAGTTTGAGCATGCCTGATTGGGATCATGGCAtgtgaactgctgctgtgaatATATAAATTGTCTTTCCTTTTCAAATCTGAAAATGGGAGTCAAGCAGCTGGTGTTACTGAGTTCAATGGATAACGTTGCAGTCTAAAAGGGCTTGTTGACCTTTGTGACCCATAAGATGGCACAGTCCAATCAGCTtgccaatacattttttattttttctaactTCACAAGTCCTACAAATTGAGCAAATGTGCATTTAGTGTTTGACCCAGcggatcatttttttttatagatgtgTCTATCTAACTTTCTAATATCCACAAAATTTTGAccatataaataatacatttttgtttcagtTAAAGCAGGTTCTGGGTTTTCTAGATTATTCAACAGATCTGAATCTTTTTATGGCATTAATAACAAGTTTTGTTCAATTGTGTGCAATCCACCTTTTTAACCTTGTTTATGATGTTTAAAAATCTTATCAGATGCCCTGTCGGTCAAATATATACTGATCCTTAGATTTGTTTGTCTTAAAATTGTCAGACTTCCTCTAACtctcctgttgttgttgttgttgttgttgttgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161843 lncRNA downstream 1749 34234506 ~ 34234711 (-) True G120173
TU161836 lncRNA downstream 9047 34226018 ~ 34227413 (-) True G120166
TU161811 lncRNA downstream 28664 34207516 ~ 34207796 (-) True G120150
TU161740 lncRNA downstream 198345 34037910 ~ 34038115 (-) True G120096
TU161686 lncRNA downstream 287266 33948520 ~ 33949194 (-) True G120052
TU161908 lncRNA upstream 156702 34400823 ~ 34404013 (-) True G120230
TU162038 lncRNA upstream 323957 34568078 ~ 34568844 (-) True G120325
TU162045 lncRNA upstream 364965 34609086 ~ 34609450 (-) True G120332
TU162057 lncRNA upstream 388784 34632905 ~ 34633137 (-) True G120341
TU162091 lncRNA upstream 497096 34741217 ~ 34744658 (-) True G120365
XM_039816871.1 mRNA downstream 17045 34211722 ~ 34219415 (-) True plvapa
XM_039816869.1 mRNA downstream 34162 34173673 ~ 34202298 (-) False ano8a
XM_039816874.1 mRNA upstream 9934 34254055 ~ 34272635 (-) True zgc:154006
XM_039816982.1 mRNA upstream 30368 34274489 ~ 34280174 (-) True ocel1
XM_039816620.1 mRNA upstream 45221 34289342 ~ 34340647 (-) True kcnn1a
XM_039816619.1 mRNA upstream 45221 34289342 ~ 34340565 (-) False kcnn1a
XM_039816618.1 mRNA upstream 45221 34289342 ~ 34340565 (-) False kcnn1a
TU161838 other downstream 7410 34228626 ~ 34229050 (-) True G120168
unassigned_transcript_565 other downstream 51372 34185016 ~ 34185088 (-) True trnak-cuu_2
TU161606 other downstream 577184 33654302 ~ 33659276 (-) True G119989
XR_005640728.1 other downstream 979524 33219724 ~ 33256936 (-) False LOC120568437
TU161146 other downstream 1384063 32849719 ~ 32852397 (-) True G119631
TU161906 other upstream 156702 34400823 ~ 34404013 (-) False G120230
unassigned_transcript_566 other upstream 524320 34768441 ~ 34768514 (-) True trnan-guu_9
TU162119 other upstream 651458 34895579 ~ 34895913 (-) True G120390
TU162164 other upstream 768287 35012408 ~ 35014214 (-) False LOC120567704
TU162546 other upstream 2467089 36711210 ~ 36737250 (-) False LOC120567714

Expression Profile