RNA id: TU161872


Basic Information

Item Value
RNA id TU161872
length 600
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G120199
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34312789 ~ 34313388 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACAGAGCGATTGAAAACAAAGGCAACACTAAGAAGCCTGGGACAAAACAGAGACGAGAGCGAAGGAAGAAAGGCGTCTAGTAATCCACACAACGCGTGAAGGTGCATcagccattttgtttttttcaatctgTCCCCCAGCAACATCCATTATTCACAACCGTGTGTTTACCTCTCACAGACGCGCACAGTCCATGCAGCAATGATCCAGGAGGATATACTGAACACCAGCAGAACAGTTCCTGGACAGATGGTCATGAGGGTCTTCATGACAAAGCGCGTGTTGAAGTTGATCTTGTTGAGGGCGCCGATGCTGCGAGACGAAGCGTCCGTGAACAGCTTGCTGTGGAGCAACATGACTCTGCCTATCAGGTAGAGTCTCAGGAACATGGGGATGGAGAGGATAATGTCCACGTCAGCGTCGGCCACCGACGGCGTGTAGGTGAAGGCCAGCCGCGCCGTCCAGGTGAAGACGTACTGGCCCGGGATGGGATGGATGGCACACACCAGCAGCTCCAGCACGATAAAGAAGATCCGCTCATACGTCATGGCTATCCTCCAATCGTCCGCACCATTGTCGACCATAAACAGCTGAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161770 lncRNA upstream 140480 34167011 ~ 34172309 (+) True LOC120568953
TU161773 lncRNA upstream 154809 34153919 ~ 34157980 (+) True G120125
TU161767 lncRNA upstream 166343 34144426 ~ 34146446 (+) True G120120
TU161700 lncRNA upstream 201442 34042552 ~ 34111347 (+) True G120064
TU161705 lncRNA upstream 299906 34012678 ~ 34012883 (+) True G120069
XR_005640799.1 lncRNA downstream 35892 34349280 ~ 34377895 (+) True LOC120568876
TU161878 lncRNA downstream 35903 34349291 ~ 34377888 (+) False LOC120568876
TU161918 lncRNA downstream 120451 34433839 ~ 34435395 (+) True G120237
TU161949 lncRNA downstream 159461 34472849 ~ 34492377 (+) True LOC120567793
TU161947 lncRNA downstream 164887 34478275 ~ 34492377 (+) False LOC120567793
XM_039816872.1 mRNA upstream 59646 34243838 ~ 34253143 (+) True nr2f6a
XM_039816873.1 mRNA upstream 59646 34243838 ~ 34253143 (+) False nr2f6a
XM_039816715.1 mRNA upstream 142870 34166976 ~ 34169919 (+) False LOC120568953
XM_039816714.1 mRNA upstream 146937 34164080 ~ 34165852 (+) True mrpl34
XM_039816302.1 mRNA upstream 305538 34004895 ~ 34007251 (+) True ptger4c
XM_039816045.1 mRNA downstream 87360 34400748 ~ 34404001 (+) True rps28
XM_039815192.1 mRNA downstream 111911 34425299 ~ 34432504 (+) True angptl4
XM_039816593.1 mRNA downstream 217167 34530555 ~ 34565481 (+) False mast3a
XM_039816594.1 mRNA downstream 222701 34536089 ~ 34565654 (+) True mast3a
XM_039816592.1 mRNA downstream 223071 34536459 ~ 34565654 (+) False mast3a
TU161769 other upstream 146943 34164103 ~ 34165846 (+) False mrpl34
TU161681 other upstream 355285 33955183 ~ 33957504 (+) True LOC120568585
TU161565 other upstream 452942 33858542 ~ 33859847 (+) True G119957
unassigned_transcript_564 other upstream 910467 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161343 other upstream 1004925 33304822 ~ 33307864 (+) True G119769
TU161873 other downstream 3760 34317148 ~ 34317766 (+) True G120200
TU161901 other downstream 87413 34400801 ~ 34404001 (+) False rps28
TU161934 other downstream 140334 34453722 ~ 34457611 (+) True G120249
unassigned_transcript_567 other downstream 458686 34772074 ~ 34772146 (+) True trnar-ccu_3
unassigned_transcript_568 other downstream 458762 34772150 ~ 34772221 (+) True trnam-cau_25

Expression Profile