RNA id: TU161878


Basic Information

Item Value
RNA id TU161878
length 297
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id LOC120568876
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34349280 ~ 34377895 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCAGCAACATCAACACAAAGCTCCCCGCTGTGAAGGCTTTGAATCGTGACCAGACAGccaggaaaaacagaaaagggaGCGCCGTGTCATTTTCTCCACGCAGGACGTAGTGAGCCGGAGCAAGTTCTTGATGGCCGACTGTGAGAGAGGAGACGTGGACACTGTGCGGTGGGCTGGACAGCGCAAAGTTTTGCCCTCGCGACCGAGAGCCTCGGGCCAAGTGGGAGCGAGGGAGCTCCAGACGGATTGTGGGACAATTCGTTGCTGATGTGATCATCAAATAAAGAGCTGTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161872 lncRNA upstream 35903 34312789 ~ 34313388 (+) True G120199
TU161770 lncRNA upstream 176982 34167011 ~ 34172309 (+) True LOC120568953
TU161773 lncRNA upstream 191311 34153919 ~ 34157980 (+) True G120125
TU161767 lncRNA upstream 202845 34144426 ~ 34146446 (+) True G120120
TU161700 lncRNA upstream 237944 34042552 ~ 34111347 (+) True G120064
TU161918 lncRNA downstream 55951 34433839 ~ 34435395 (+) True G120237
TU161949 lncRNA downstream 94961 34472849 ~ 34492377 (+) True LOC120567793
TU161947 lncRNA downstream 100387 34478275 ~ 34492377 (+) False LOC120567793
TU161945 lncRNA downstream 106457 34484345 ~ 34492377 (+) False LOC120567793
XR_005640613.1 lncRNA downstream 108327 34486215 ~ 34492377 (+) False LOC120567793
XM_039816872.1 mRNA upstream 96148 34243838 ~ 34253143 (+) True nr2f6a
XM_039816873.1 mRNA upstream 96148 34243838 ~ 34253143 (+) False nr2f6a
XM_039816715.1 mRNA upstream 179372 34166976 ~ 34169919 (+) False LOC120568953
XM_039816714.1 mRNA upstream 183439 34164080 ~ 34165852 (+) True mrpl34
XM_039816302.1 mRNA upstream 342040 34004895 ~ 34007251 (+) True ptger4c
XM_039816045.1 mRNA downstream 22860 34400748 ~ 34404001 (+) True rps28
XM_039815192.1 mRNA downstream 47411 34425299 ~ 34432504 (+) True angptl4
XM_039816593.1 mRNA downstream 152667 34530555 ~ 34565481 (+) False mast3a
XM_039816594.1 mRNA downstream 158201 34536089 ~ 34565654 (+) True mast3a
XM_039816592.1 mRNA downstream 158571 34536459 ~ 34565654 (+) False mast3a
TU161873 other upstream 31525 34317148 ~ 34317766 (+) True G120200
TU161769 other upstream 183445 34164103 ~ 34165846 (+) False mrpl34
TU161681 other upstream 391787 33955183 ~ 33957504 (+) True LOC120568585
TU161565 other upstream 489444 33858542 ~ 33859847 (+) True G119957
unassigned_transcript_564 other upstream 946969 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161901 other downstream 22913 34400801 ~ 34404001 (+) False rps28
TU161934 other downstream 75834 34453722 ~ 34457611 (+) True G120249
unassigned_transcript_567 other downstream 394186 34772074 ~ 34772146 (+) True trnar-ccu_3
unassigned_transcript_568 other downstream 394262 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_569 other downstream 398190 34776078 ~ 34776149 (+) True trnam-cau_26

Expression Profile