RNA id: XR_005640799.1


Basic Information

Item Value
RNA id XR_005640799.1
length 315
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id LOC120568876
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34349280 ~ 34377895 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcccATGCAGACTGCAGCAACATCAACACAAAGCTCCCCGCTGTGAAGGCTTTGAATCGTGACCAGACAGccaggaaaaacagaaaagggaGCGCCGTGTCATTTTCTCCACGCAGGACGTAGTGAGCCGGAGCAAGTTCTTGATGGCCGACTGTGAGAGAGGAGACGTGGACACTGTGCGGTGGGCTGGACAGCGCAAAGTTTTGCCCTCGCGACCGAGAGCCTCGGGCCAAGTGGGAGCGAGGGAGCTCCAGACGGATTGTGGGACAATTCGTTGCTGATGTGATCATCAAATAAAGAGCTGTGGCAAATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161872 lncRNA upstream 35892 34312789 ~ 34313388 (+) True G120199
TU161770 lncRNA upstream 176971 34167011 ~ 34172309 (+) True LOC120568953
TU161773 lncRNA upstream 191300 34153919 ~ 34157980 (+) True G120125
TU161767 lncRNA upstream 202834 34144426 ~ 34146446 (+) True G120120
TU161700 lncRNA upstream 237933 34042552 ~ 34111347 (+) True G120064
TU161918 lncRNA downstream 55944 34433839 ~ 34435395 (+) True G120237
TU161949 lncRNA downstream 94954 34472849 ~ 34492377 (+) True LOC120567793
TU161947 lncRNA downstream 100380 34478275 ~ 34492377 (+) False LOC120567793
TU161945 lncRNA downstream 106450 34484345 ~ 34492377 (+) False LOC120567793
XR_005640613.1 lncRNA downstream 108320 34486215 ~ 34492377 (+) False LOC120567793
XM_039816872.1 mRNA upstream 96137 34243838 ~ 34253143 (+) True nr2f6a
XM_039816873.1 mRNA upstream 96137 34243838 ~ 34253143 (+) False nr2f6a
XM_039816715.1 mRNA upstream 179361 34166976 ~ 34169919 (+) False LOC120568953
XM_039816714.1 mRNA upstream 183428 34164080 ~ 34165852 (+) True mrpl34
XM_039816302.1 mRNA upstream 342029 34004895 ~ 34007251 (+) True ptger4c
XM_039816045.1 mRNA downstream 22853 34400748 ~ 34404001 (+) True rps28
XM_039815192.1 mRNA downstream 47404 34425299 ~ 34432504 (+) True angptl4
XM_039816593.1 mRNA downstream 152660 34530555 ~ 34565481 (+) False mast3a
XM_039816594.1 mRNA downstream 158194 34536089 ~ 34565654 (+) True mast3a
XM_039816592.1 mRNA downstream 158564 34536459 ~ 34565654 (+) False mast3a
TU161873 other upstream 31514 34317148 ~ 34317766 (+) True G120200
TU161769 other upstream 183434 34164103 ~ 34165846 (+) False mrpl34
TU161681 other upstream 391776 33955183 ~ 33957504 (+) True LOC120568585
TU161565 other upstream 489433 33858542 ~ 33859847 (+) True G119957
unassigned_transcript_564 other upstream 946958 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161901 other downstream 22906 34400801 ~ 34404001 (+) False rps28
TU161934 other downstream 75827 34453722 ~ 34457611 (+) True G120249
unassigned_transcript_567 other downstream 394179 34772074 ~ 34772146 (+) True trnar-ccu_3
unassigned_transcript_568 other downstream 394255 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_569 other downstream 398183 34776078 ~ 34776149 (+) True trnam-cau_26

Expression Profile