RNA id: TU161918


Basic Information

Item Value
RNA id TU161918
length 1533
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G120237
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34433839 ~ 34435395 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGATTGATTCATACATTTATTCATTACCATGTACAAATTGTATTCCGGTGGTACAAAGCTGTTGTAAGACTCCAGTGCtcaccctcctgttgtctttattGCAGTAAAAAAGGAAATACCAGCATGATCAAGAGTCAAGAGGTACTTTGGCAAATATAAATTATGTGTTGAGAAGGCAAGCAGACATCTCAAGCAAATGTAACGTGAGGGGAAAGAACAGCGCAAGAGTATCAATGAGCGGCTTCTGTCAGCactcattaaaaaaagaataaaaatccataaaatattttattttaaacacacacttaaaacaAGTGGACAGAGGAAGAATCTCggttttcttcctttcttcatCGTTACACAACTGCAAGGTACGGACTCCCAGTATGTATGGATATTGCAATTCTATGCGAGTGTGCTTAGGAGTGAGTGTATGAGACAAACTGTATTTAAGTGAGCTCATGTCTGCGAATATGCTTATAGATTCCCAtttcatatctgtgaactgtaACCCTGTTCCTACCACTGACTCAAGTGAATAAAACGGGTGGagcaggggagaaaaaaaacacaaaaacatttggcAAAAAACCCATCATGGTTGCAGAGATGAGGACGATGGATACAGCCTGCAAATGTTTCTCCTTATGTCCTTGTCTTTGTTCAGCTCTCAGGGTGAGACACCAAATCTTTGTGCTCGTAAACCATACCCCAGACTGTACACAGGGTTAGGGGGGAGGGCGTGAAGGATACACAGCGAGTAACCgaacaagagacagagagagcgaaaGAGGGAAGTATAGTGGAGAGGTTGGGTGACTAGTTCAAAAGGAGAGAGTGGCTTGCGGCTGCAGAGTGTCCGATAGTGTCTCGAAGACAGACAGGGTGAACAGTTAGGGACTAGGGTTGGGGTGCAGAGGTCAGGGGGGGTAAAAGAGGACAGATGGGGAAACGAGACTTCACTTCTCCCTTGTTGTCTTATTTCAGAGGTATTGTTGTAGAAAGTGCAGCAGCATTATCTCGTAGTGCTCGCCAGACTCGGGGCAGCGAATACTGTGTCGCTCGTTGGGGTATACCTGGAAAATTGAAACAGGGCAACCAAATTACAGACTGACGTGTACTACAGGTCTGTATCCTGTCAAATCTGCTTTGGAAAATACCTTACAACAAATGTAATTCTTCATATAGAATCCTGACATGGATTCATCTGTTGTattttactaccacttaacattACAGTGGTCTAAGCCAATATCTTAAACACATTTGCTGTTGGCTTTGTAAATTTTTTGTAGTGCAGACTCACACGATCACATAGACATGTATGATGAAAAGGCATGTAAATGATGTCAACCTACTATGGAGACATTTCATATGGCTACTTCAGAAAGAGGCGGGTGGAATAAGGCTTGTGATGCTAACCTGAAGCTGGTAAGGCTTCCCAGCGCGGATTATCTGTGACACTAGGAAATTGGTGTGGAAAAAGTGCACATTCTCATCTAGAAATCCATGAAGAATCAGCAAACGGTTG

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640799.1 lncRNA upstream 55944 34349280 ~ 34377895 (+) True LOC120568876
TU161878 lncRNA upstream 55951 34349291 ~ 34377888 (+) False LOC120568876
TU161872 lncRNA upstream 120451 34312789 ~ 34313388 (+) True G120199
TU161770 lncRNA upstream 261530 34167011 ~ 34172309 (+) True LOC120568953
TU161773 lncRNA upstream 275859 34153919 ~ 34157980 (+) True G120125
TU161949 lncRNA downstream 37454 34472849 ~ 34492377 (+) True LOC120567793
TU161947 lncRNA downstream 42880 34478275 ~ 34492377 (+) False LOC120567793
TU161945 lncRNA downstream 48950 34484345 ~ 34492377 (+) False LOC120567793
XR_005640613.1 lncRNA downstream 50820 34486215 ~ 34492377 (+) False LOC120567793
XR_005640612.1 lncRNA downstream 50833 34486228 ~ 34492377 (+) False LOC120567793
XM_039815192.1 mRNA upstream 1335 34425299 ~ 34432504 (+) True angptl4
XM_039816045.1 mRNA upstream 29838 34400748 ~ 34404001 (+) True rps28
XM_039816872.1 mRNA upstream 180696 34243838 ~ 34253143 (+) True nr2f6a
XM_039816873.1 mRNA upstream 180696 34243838 ~ 34253143 (+) False nr2f6a
XM_039816715.1 mRNA upstream 263920 34166976 ~ 34169919 (+) False LOC120568953
XM_039816593.1 mRNA downstream 95160 34530555 ~ 34565481 (+) False mast3a
XM_039816594.1 mRNA downstream 100694 34536089 ~ 34565654 (+) True mast3a
XM_039816592.1 mRNA downstream 101064 34536459 ~ 34565654 (+) False mast3a
XM_039815519.1 mRNA downstream 133999 34569394 ~ 34607756 (+) True pik3r2
XM_039815521.1 mRNA downstream 133999 34569394 ~ 34607756 (+) False pik3r2
TU161901 other upstream 29838 34400801 ~ 34404001 (+) False rps28
TU161873 other upstream 116073 34317148 ~ 34317766 (+) True G120200
TU161769 other upstream 267993 34164103 ~ 34165846 (+) False mrpl34
TU161681 other upstream 476335 33955183 ~ 33957504 (+) True LOC120568585
TU161565 other upstream 573992 33858542 ~ 33859847 (+) True G119957
TU161934 other downstream 18327 34453722 ~ 34457611 (+) True G120249
unassigned_transcript_567 other downstream 336679 34772074 ~ 34772146 (+) True trnar-ccu_3
unassigned_transcript_568 other downstream 336755 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_569 other downstream 340683 34776078 ~ 34776149 (+) True trnam-cau_26
XR_005640811.1 other downstream 1167993 35603388 ~ 35609359 (+) False LOC120568940

Expression Profile