RNA id: TU161949


Basic Information

Item Value
RNA id TU161949
length 3217
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC120567793
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34472849 ~ 34492377 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGATTCAGAGTCTGAGAGAACACACCCAAGAGGGGCAGTTACTCATCCTGATATGTGTAATCAGATTACGTCAGCACAGAGTGACGTAGTTATGATTCATCTGAGTCTATCAAACAAGGGACCCATAAAAATCACTTTTGTACACACAAGGCTATTTCTTTACTGTTAGTGTTGTCAACTCCAGGCTTCCACTGACAGAGAACAAACTAAATCTTGaggattattttatttaaaataataaatgaaataggGGGACCATATATTCTTTGTTGGCCTTGATATCGACAAGTCTGACCAATTCATTCCCAGTGAACCGAAACCAATGAGCCCACACGAATGCAGACAAAAGAAGACAAATGGACAAGTGCACCCCCACATGGACGAACTGCGCGAGTAAAACAAACTTACAGCATAATGCAACTTCGACAGTGGAGCGCACAACAAAAAGGCACAAGTATACAGCACTCCTGACTGACCATTTAGTTTCCACAGGGCAAAATGTCCAAGGTCGATGAACACAATGGCACCGTAAAAGACCCACGAGTCAGTCGACGGAGCTGAAGATttagatcatttttatttttcaaacaatTGAGAGATGTTAAACACTGAACAAATAAAGAGCCCCCCCAGTCAGAACTCCAGAAAACAGATTCTTATCAACCAGTTGTAGCACTTTTCCTTTATTGCCAGCTGCGTTGTGCAGTTTCTCATTGTCTGCAGCTTCAGTCTCTCTAGATCAGTGTacaaaaagcaacagaaacgGTGCATATACCAGCGTCATATTGATCATGGGATTTGCAATTCTCGTACATACACCCAGCTCCACGGACaggcgtttttttttatttttttttttttaattctgaaGCAAATCCAGATTAACCATTTACCAAGGCACATTGGTAGGGATGAATGACTGAAAGAACGAATGGAAAGAGGCTGCGCAGAAGCCAATCTCAATTTAAGTTGGGAGAAAAAGCGGTAGTGATTTGTGAGTATAAAAGGGAAATACATTTTAAGTATTAGATGTCACAtggaaaatgccaaaaatatcTGATGCACacagctttctctctctctctctctctcccctttgctgtattgaaaaaaaaaaaaaaaaacggaagcAAAATAGATGCTCCTCAAACTAAATACTTTCTAAACTCTCAAAAGCAGCTGCAAAAAACTATTAATGCGTCTTAAACTCTGAGTAAACTGTGGGCACATAGATTGTGGGAGCAGTCACTATTCACATTTGAATTAAGTCAGTGATGAAATGACCAACAAGTTGTCAATTTATGAACAAGTGCATTAGAGGGCTCAATCCTGTACATTCACTAAGGCTGTTTAACTCCGAAAAATATTGGTGATGGAATTCCAGAAGGCCAACATTATCTatggaaaaagaaacaaaaggggAGTCCCAGTATTCaaacatttcattgttttttgtcTCTGAAAGTGCTATTGATCAGCATCATctgatttgactttttttttttccccccccccaatatgTTATGATTGGGAGATAATTAGTGTGATGAtcgaatttattttttttaaactttaggTGAATTAACTTTAAATTAGCACCACACTATTTTTGATGAAACCATTTTTTAAAGCCAAATGAtttttctgaagaaaaaaataattcttaAGCGTAGCGATGGGATGGGCATACTGGAGCTGTGTGATGAGACAGAAAGAGCCTACGTGGGTGAAGGATGGAGTATGGAATGTCAATGACCAAATGCATTGGCCAGTCTTAGAGAAAGACCATGCAAAAACATTTGTATGCCCCTTCAATATTGAAGATTGGGCCGACAGCATTGTGATGTAaacagtgaaagaaaaaaagaaaagaaaataaccaGATCAGTTTCCGAACGTCCCATAAATGAAGTggtcaaaataaataagatgTATACATGATAAGAAATTTATAATTTACTCTTTATATCTCACATAAAGCTTCTTGTAACGACCTAATACGATCCAGTATTTCTTAATCTGGACATGTTCGGCTCTAACTGTGCTAGATTTATCAACACCTTTCTGGGCACCAACATGGCGGCCTGGACAGGACCGCTAAACCCCAGCCTTCCCTCAAATGGAACCCTAGATTGGAATTCCTCATTAGAAACTAGaaggtaagaaaagaaaaacggtaTCATCCCAGTGAGCCTGAAATAGGAGGTACAATTCAGAACATCATAAATTGACATTACACCATTTCTGGTTGTCTGGGATAAGTCCGTCCTCTACTTCTAGCCTTCAGTGTTAGTAGCAGCATTCTGCAACTAGGGCCTCATCATTCCTGTGGCTTTcagtttgaaaaataaaacagaaacagcCCTTGGTATTACAAACTCAACtattcttttaatctttactCTTACCAACATCTCATTAGAATAACACAGAAAGAGAGTaggaggcgggggggggggagggaAGCCGGTCAAGGCGGAACGCGTCCTCTGTGGCGGCGTCAGCGAGGATCATGTCCGGGTCGTTGAGCATGTGCAGGCCATCGAGCGTCAGCGGGTCGAATTTCAGATCGTCCAGCGGGAACGGAGAGTCGACATCGAAGCTGACATCTGTGGACAGCGAGCCAGTCAGGTCCTTGGGCAGGCTGGGGGGAGACTCTCCGCTCACTGAGCAGAAGAAAGACACGAGAAGCAGCCAGGAAGAACCAGTCATCACTGCGATACACTGATGTGAACAGACGCGCCCAATGCTCACCGTGTTCATGTCCATGGTCATGTCATGTTGTGACGATGTCTGGTTGTCTGACGTGGAGCAGCAGTTCACGGAGGACTGCAGCTGGACCAGACCTGTCTGCTGGGAAATAAAGAGCGGGGTCTTAATGGATACAGACATCGTGCAGTCATCAAGTATCACTTTATATGTTTTAATGCTGGCTTATCACAGATTAAGTACATCAGTATCTGCTTTTATAGTCTATTTACTGATATGTAGAACTAATTAACAATACATAAATGGCTACAGGCTGCATTATTatgtaatgtactgtacagtatattaggACCTTACAGCTTAATTCATTTTCCAGTGGTTTACTGTTCAAATTCTACTGTAATCTTATATGTATCGTTGTTGACAATGATGTTCATCAGTAAACTGTCAAATATCCTTCATATCTTGGACATGTGTTTGCCACAACACTTTAATAAATATCTTTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161918 lncRNA upstream 37454 34433839 ~ 34435395 (+) True G120237
XR_005640799.1 lncRNA upstream 94954 34349280 ~ 34377895 (+) True LOC120568876
TU161878 lncRNA upstream 94961 34349291 ~ 34377888 (+) False LOC120568876
TU161872 lncRNA upstream 159461 34312789 ~ 34313388 (+) True G120199
TU161770 lncRNA upstream 300540 34167011 ~ 34172309 (+) True LOC120568953
TU161998 lncRNA downstream 75808 34568185 ~ 34568765 (+) True G120291
TU161997 lncRNA downstream 111483 34603860 ~ 34607756 (+) False pik3r2
TU162002 lncRNA downstream 125397 34617774 ~ 34618212 (+) True G120295
TU162009 lncRNA downstream 153315 34645692 ~ 34665214 (+) False pde4ca
XR_005640791.1 lncRNA downstream 275724 34768101 ~ 34771677 (+) True LOC120568809
XM_039815192.1 mRNA upstream 40345 34425299 ~ 34432504 (+) True angptl4
XM_039816045.1 mRNA upstream 68848 34400748 ~ 34404001 (+) True rps28
XM_039816872.1 mRNA upstream 219706 34243838 ~ 34253143 (+) True nr2f6a
XM_039816873.1 mRNA upstream 219706 34243838 ~ 34253143 (+) False nr2f6a
XM_039816715.1 mRNA upstream 302930 34166976 ~ 34169919 (+) False LOC120568953
XM_039816593.1 mRNA downstream 38178 34530555 ~ 34565481 (+) False mast3a
XM_039816594.1 mRNA downstream 43712 34536089 ~ 34565654 (+) True mast3a
XM_039816592.1 mRNA downstream 44082 34536459 ~ 34565654 (+) False mast3a
XM_039815519.1 mRNA downstream 77017 34569394 ~ 34607756 (+) True pik3r2
XM_039815521.1 mRNA downstream 77017 34569394 ~ 34607756 (+) False pik3r2
TU161934 other upstream 15238 34453722 ~ 34457611 (+) True G120249
TU161901 other upstream 68848 34400801 ~ 34404001 (+) False rps28
TU161873 other upstream 155083 34317148 ~ 34317766 (+) True G120200
TU161769 other upstream 307003 34164103 ~ 34165846 (+) False mrpl34
TU161681 other upstream 515345 33955183 ~ 33957504 (+) True LOC120568585
unassigned_transcript_567 other downstream 279697 34772074 ~ 34772146 (+) True trnar-ccu_3
unassigned_transcript_568 other downstream 279773 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_569 other downstream 283701 34776078 ~ 34776149 (+) True trnam-cau_26
XR_005640811.1 other downstream 1111011 35603388 ~ 35609359 (+) False LOC120568940
unassigned_transcript_570 other downstream 1735447 36227824 ~ 36227906 (+) True trnal-uaa_3

Expression Profile