RNA id: XM_039815519.1


Basic Information

Item Value
RNA id XM_039815519.1
length 10116
RNA type mRNA
GC content 0.44
exon number 16
gene id pik3r2
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34569394 ~ 34607756 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACTCCCCTTCCCTGCGCCGTGCTGAGCTGGAAAATGGCTGTGTAGGGGAGCAGGGAGTCATGAACgggaaaagaaagaaggagcgagcgagagaaagaaagaaggcgAAACCATAAGTGAACAGAAGGTTTGCTAGAAATGTATTGCACACCAAGAAGCTATCGTCCGCAGATAAAGACACCACACGGGCTCTTGTCTGCTACTTTGAAGTGTTTAAAGCACAGCAGCCAAAAGTGAGAAGAGTCGAGAAATATCCGCGGGTCGGTCACAATCCTTGTCCAGAACATGTGGTAGCCTGAGAGAACCGAAGAGGATTAAAGACCTTCCCGCTCTTCCGCCAATCAGACAACTTCATTTGACCGCGGAGAGTCAACGACGCAGGGCCCTCGACTGGCAAAATCTTTTACCAGGCTGCTCCAATAGCCACAGCCAGCAGGTTTTCGCTGCTTGAAAGAGCATGTTGCCAACGCTCTCCCTCTGCTCCATCATCTGGCTCAACCGGGGTATCAAGCTGAGGAAAGTGCACCAGTTCACCAACACCGGTCAGGTCTGAAACCGCTGCCTCTGCAGACATAGCAGCAGCAGAACACTACCTTATCGACTTTTGAAAATGCTTCTAAGCTTTGGGTgactccctctcctcccctcatTCCCCCGACCCCCTAAGCCACCGTACCAACACCAACACCAGAGTTTAGTGACTCAACAGCCTTTTTGGTTTCTGAGGAGGATTTCTGTATAGGCGAACCTCTGTTGTTGCAGTGGGACTCGGGCTGCACCATCTAATCCTCTATTCAGCGGCCATTTTGATTTTTGCCTCCCTAACAAAATGGCGATGGAAGGTTTTCAATACCTTGCGCTCTACGCATTTACCAAGGACCAGGAAGAGGACCTGGATCTGCAGCCTGGGGACCTTCTGACAGTCAGCAAGGCCTCTCTGCTGTCCATGGAGAACTACCAGGAGGGCTGCGTGGAGCAGCCTGAGCGCCTGGGCTGGCTCCTCGGGTACAACGAGCGCACCAAACAGAGAGGCGACTTCCCAGGGACGTTTGTCGAGTATGTGGGCCCCGTGAAGATGGCGCTCTCATCGAGTCAACCCAGGTCCCAGCGACCCCTCCCTGCTGCTCCAAGGCCCGAGTCGTCTCAAGCTGTTTCTGTGCCGGACCTGAGCGAGCAGTTCACACCGCCAGAGACGGCTCCTCCAGCCCTTGTCAGCCTGATCCAAGCCATAGAGAAGAGAGGTTTGGACTGCAAGATATTGTACAGGCCAACTGCTTCCTCAGGTTCAGACAGCCCTGTGTACAGCCTGAGCTCTGAAAGTGAGATGTGTCAGAGAGATGTGGGGTACCTGTCGGAGTGTGTCCTGAACTACCTGAGAGACCTCCCGTCCCCCATCATCCCTGCCTGTATCTACGCTCACCTTCAAACTGCTCTCACGCTGCAGCAGCAGGTCCTACAGCAGTCAGCAGACGGTGCAGCTGCTGGAAGCCATGACAGAGAGGTAAGCCTGGTCCTGGAGAACTCCACCTCCGTCCCTCTCCATCACCGTCTCACCCTGCAGTACCTCCTCACACACCTGGCCAAAGTCAACCAGGCGCAGGCCAGCCAtggcctggacacacacacactgggaaaGATCTTTGGACCGCTGTTGATACGGACAGGCCCCTCCACCCCTTGGTTGTCAGTGGATGAGGAGTTCCCTGCCCTTGTGGTGGAGAGGCTGCTGATAGAGAGAACTACAGAGCAGGACCTCACTCCTCCAGTTCTTCCAGCAAAGCCAGTCAGGTCGAAAATGGCACCATCAGCCATGACAGATACAAGCAGCCTGCTGAATGATGCTGAGTGGTACTGGGGAGAAATCTCCAGAGAGGAGGTGAATGAGAAGCTGCGAGACACTCCAGATGGCACCTTCCTGGTCCGAGATGCCTCTAGTAAACTGGAGGGCGAGTACACTCTCACCCTCAGgaaagGGGGGAACAACAAGCTTATAAAGGTTTACCACCGAGACGGGAGGTATGGCTTCTCTGAGCCTCTTACCTTCTTGTCTGTAGTGGAGCTCATCAATCACTACCGCCATGAGTCCCTGGCCCAATACAACGCCAAACTGGACACCAGGCTTCTGTACCCTGTCTCTAAATACCAACAGTTAGTGAAGGAGAACAGTATAGAGGAGGTGGGAGAGCAGCTGAAGGTCTATCACGAGCAGTACCAGGAGAAGAGCCGCGAGTACGACTCTCTGTATGAGGAATACACACGCACCTCACAGGAGCTGCAGATGAAACGCACAGCCATTGAGGCCTTCAATGAGACCATCAAGATCTTTGAGGAGCAGTGTGAGACTCAGGAGCGCTACAGCAGGGAGTCTTTGGAGCGATTCCAACGCGAGGGCAACGAAAAAGAGATTCAAAAGATCCAGAGCAACTCGGAGCGTTTGAAGTCTCGTGTAAAGGAGATCCACGACAGCAAGCGTAAGTTAGAGACGGACCTGAGACAGCAGGTCTCCGATAACAGAGAGATCGACAAGAAGATGAACAGCCTCAAGCCGGATCTCATGCAGCTCCGCAAAATCAGAGACCAGTACCTAATATGGCTGACACAGAAGGGGACAAGGCAGAAGAAGATTAATGAATGGTTGGGCATAAAGAATGATGCTGATGATTCCTACTCactggaggaggatgagggTTCACCCCACCATGACGAGTGTACCTGGTATGTGGGTGACATCAAACGCACCCAGGCTGAGGAAATGCTGAGAGGCAAATGTGACGGGACCTTCCTCATCCGCGAGAGCCAATCACAGAAGGGCTCCTACGCCTGTTCTGTAGTTGTGGAGGGGGACACCAAGCACTGCGTCATCTACAAGACGGCCACAGGTTATGGGTTCGCTGAGCCCTACAATCTGTACTCATCCCTCAAAGACCTGGTGCTCCACTACAAAAACGTCTCCTTGGTCCAACACAATGACCAGCTAAATGTAAATCTGGCCTACCCAGTCCTAGCCCGTtctcagaaccagaaccagcaCCCCAGATGAATTATCCATCATCAGTGTACACGCCAACCAGGGTGGCGAAACTGAATTTTCACTCATatgcattgaaaaaaaaattatccttTGAACAATGCTTGTTCTTGTTTAAGTGGCGAAGAGAAATAGACTCAACAGCCATGATTTTAAATTCATACATGTTGGTGCTAATTTCCTGCACCAACCCCTGTCCAGCAAAGAACACTCCTTGCTTCCAGCATGGCTTCAAAGTAAACACACTACTACCGGTACTGAAGcactgtacagctagcctggctaacGCGGTGAGTTTTAACTTGAGGAGAGTGTTGCATTAGCCAGCCCTGACTGTACAGTGTCagttatgaaagaaaaaaaactgtgagaAATTCACAAGAAAATTAAAGCACACAAAATGTGGTTTTGAAGATCgtggagaagaggaaagaaaccAGATGGAGGGATGATGGGAAGATTTACAGGAggcacttttgttttttttgcctgaaCACGTGATAACTGTCCATAGACAAAGGCCCGATCTGTCATCCCCAGACTGCCTGCAAACCCTCCGTAGACAAAAGCCTGAGCTGTCATCCACTGAAAGGACTGGCTTGGCTGAACCAGGCTGCTCGCTTCACACCTAAAGGCGGCTGAAAAACCGTGGACCACAGGGTGTAGTCACTGAAGCCGCGAGGGGTGTGGGAGGGAAAGAAATTGCTGGGGTTGATGTTTTTATGGTTTTTTGAAAAGATTGATTCAGTTTAAAGCTTGCTTAAGTGCCATAGTAATAGCTTTGAATGACCACAAGCCTGTGTCACTAGAGGGGGGACGCGTCGAGGTtgaaagaaggaaggagagaatGAATGGCTGTCGACATAgacaaagctttaaaaaaaataatacacacatataggtatattttttatgaaatgATCTTTATTTCCAACTGCTTTGGCTTgttgcttttctctctctctctctctctctctctctctctctctctctctctctcagtgggCCTCCTTTTGAATTGACGAGGtacaacatacagtaaatactgTACTGCAGGATAAAAATGCATGGTACATATTTGGTATATTGTGAATATGGAATTTTAATCACAATACACTAGATGGAGaggtacattgataaatgcagttCCACGTGATTCAGGTTTCCTTCTAAATGGAAATTGTGGAAAGACTCCAAGCATCAAACGTCTCTCTTTTTCAAAcatcttccttctttttttcaccCTATTTGATACTGTAGCATCTGTAGCCATTGACTTAGGGCATAACTGTTAGTGCTCCTCTCATGTGTCTTGTTTCTATATGCTAAAGACACTTGCAGAGCATCAATCTATGTGATTATTGTGACTTTGATACTGTATTTGCCTTGTCTCTAGTTAGATTAGACTGTTTTAGCGGTACAATGTCTTTGCAgatgtttattgttttttttttaatgcagatTTACTTGCGGTACTTCCTTCCCCCTTTTCACGCTTAACTGTTCATTTCATCCCAAGCTTGACTCAGAGCTGTAGAACATTtgatgtacaaaaaaaaagaaagcagtaATATAactcatgtacagtatatttcagACACATGCAGTCAGTGTATGTGACTACACAGTTTCATCACTGTGTTTCTTTATGTTTTCAGAATATTTGCTATGCTCTTAGATTCTGTTTAAGGAAGCACAGTACCCAGCTAATGTGAGCCAAATGAAGGATGTCTTTTCATGtagcaagaaagagagagagaaaaaaaaaagaaccaggCCGTTTGCCATTTAGCATGGGCTCTGTGGTCTGAGAGATTATCTAGTGCAGTATGCATGGAGTCCTTCATTTggattgttgtttttcttgtttcacTTGGCAACAGTGGTTGATAATTGTACTTTTTGTACTGCAAATACAGTATGATGTGTGGTAGTACTATGCACAACAGAGTCATATGTGGATAATACGTTTTTAGATTTACAGACCGTGTTCTGAGATCAGTCCCCTCCCTCTGTTCTGTGCTGTGGCAGTGAATTTCTCCCATTTCCCTCATGTCCATTTGGCTTGAGGTAAAGATTGTACCATCGTTCTACGTCACCTTCAAAGCACAGTCTATTTGCGTAGAGGCAGGGTTATTCAGTAACGGTTGCGTGGTCGATAAAAATGAAAGGTGTCGCGCGATGCCGCTTTTAAATTTgatttacatagttgatttcttgagagaatgaatgaatattaaaaaaaaaataacaaaattttCTAACATGTCTCATGACTCAGACTgccaaacagagaaaaaaaaatatttttgtagaaAGGCATAGAAGAGTCACACGTTGTTGGCAACAGAAAGTTttagaataaaaagaaaaaaaaagcactgtTTTTAAAGGTTGCACATTTGGCATtttggatttgttttaatttttgttgGAGAGGGATAGAAATTAAAGTGAGATATTCACCTACTCTTCTGGTCACGTAAGTCAATGATGTACGTTTCATCCGAAGACCTACGCTTCCAACAAACACGATGCTTTTTCCGCATAGTATCATTTCTGTTTTTGAAATGTTGATTCACAATTTTCAGGTAGCGACATTTTTCCACACGGACCAGTCGCATTTCCAAATGATACCCAACTCGGCCTGAAAAGTTTGAATCAAGACGTCATTTTGATTTCAGTCAGGATGAATCAACCGGTAACGGCGGTGCTTCTGATTAGAGGGCTAGAAACACACGTGAGCGAGAAAGATTAGAAGTGCCTTTAGTCGCTGTGATGAGCTCGTATTCTCCTCGCTGTCGTCGGAGCGTCGCTCTACAAGATGGTGCCACCACCACCATTTGCTGTGCCCCGTGGTTCACACATTTGCCATTTATCAAAGACTAAATGGTATCTGgcaagtgtgcgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtcagcTTGAGCAAATCTGAGCACATTCTAGATTTTAGTTGTGCCTCTTTGTTGTTACATCTATAGTTGTTGCATATTCCTTATGTCTATGGTGGGGGCTGTGCAGTAGCTTggtgctctctctcactgtgcaCCAAAGCTAGATTTCTTTGGtgtgttactgttttttttttgtttttttttttatttgtctggtATATTTTTTGAGAAATCTCAGATAAGATAGAAATGTGAACTGTACACATCCGTGGCCCAGCCCAGTTGTCTGAAGCTCATTTGATAAGCTCTCAAGTTAATGCATGCAGCATTTCTCAGTGTTTTATATTAAGAGTCAGTTCCTTTGCGAACAGGCAATCTGGTTGAGTCATCCGCCACTGCTGACGCATCCATTATCCAGTTTGTTGGACCAACACTTTTGTGActgcactttttttcttttttttctctgttccaCACACTCGTGTGTCAACGCCCAACAACCATAAACTCGCAGACAGTGGTGAAGCTCAGTTGTCAATAGTGATTTTAGTTGATAGTTTTAGGGCTTTCCTGACAGTTTTCTTTATGATATAcagtgtacagtatatgccTTTGGTATTTTGGCGCTCAACAGCTGCTGTCATGTACAGTAATTCTGATGCTTTTTGGCTGATTGCAATGTTTTCATTATAGAGCTAGTTTTACTATATGGACTGTATAAACTGTAATACTTTTCAAATCAATTTTAAGGAGAGCTGCTGGCTCATTATGCAATTAGTGTCCACACAGGAAAATTGTCCAACTTAACAAGACCAatagcattgttttttttcctaaagggtcagttcacccaaatccGACACTTAACTACTAGTGCTATCTAAACATGCAGATTTTGAGATATCactcttttttaattttccttGGAACTACTTTCTACTGAAGAAATAGTCCCTAAGAAAACTGTTCACAGTGAAGTCTTTGGATTATCCAGAGTAACCAAAACATTGTTTCTGGAAAGACATATtgctgttgattattttttttattgaaagtgAACTTAAACGCATGGCTAGATACTGCTAGGTGTACCAGGTGTCTGGGAAAACCATGCTAATGGGTTGCAGTTTATCCCAAAACAGGCGAGCTTGTTTCAAAGAGGTTCATGAACCGGCTGGTTCTTCTTCCATGTAAGCGATTCGATCAATGTATTTGAGTTGCTTAAAGGAAAATAGAAATGTAGAGCTGAATAGCTTCCGGCGTCACTTGTTAAGATGGCCATTTTTGCAGTGCAGGGAAAACACTTTGATCCGCCATATTTGCCATGTTAAGCACAGCTGTTCAACAGTTAGAAGCAATGCAACTTTAGTAGCAATGAAACCTGGTCGGGCATTGAAACGGGCAGAAGACGACGACTTTATTGCGCATTGACTTGGAGTTGAGACTTTTAGCCCACTGTTGGTAGAAGTTGCTCTGAAACGCAAGGCTTTCATCCTGCTCATCCAGTAGATATGCATTTATGTCGGCGCTTCTTGTAGAAACACTTTTCTATATGACAAATGATCATTCAAGGAACTCAATATTTTTTCATCGGCTTTGGTACACTGTAAATGACGCTAATTGAAAATGGCctcacacacaaagcacatCTTTCACTGACTACAAAGAAACATATATTTGGTGTCTATTACGGTTTGAAGAACGAGAGACATGCTAAgagaataaatattttgaaatatatatactcAGATATCTATATTTTTGAATGATGTCATTCTGATTTGGATTGCGCTCGAAACCAATCAGAAAGAGGCTTCGGCGTGACCGTGATCTTTCGACTTCTGCGGCTGCTTCGTAATGAGCGGTTATAAAAACGCAAGCATTTTTACTCTCAGCTGCAGTGAGCTTCATCGTGATCAGCAACCGACTTCACAGTTTAACGACATCCAGTACGCGTAATCTATTAAGCATGATTATCAGGTGGCGTCGAGAGGAAGAAGCGAGCTCACGTACAcgtacagtaggcctacagtaggcctatgtagCTACAGAGCCGAGTCTGTATGTTAAACGCAGTCTTGGCTGCTTTGCATTTGATTCAATATTTAGAGaggatttttgttttcttgaaCAAGAGTTATTGTCATTTGGAAGATTccggatttcttttttttttttttgtgagtagACGGGGAGTGTTAAAAGTTCCACCACAACACTTCCAGTAGGATGCAGCCAGCCACAGAGACCCACCACAGATCGGACCCCGATGCTGTAACAAATTGTGAACCATCTTTACCACTGTACGGTCCTTTGGTAGATCCTGTGGTCGCATCCGTATTAAAAGTCCAACCTGTTGACCTGACAGAGTAACAAGGTACATGATTGAACAGTTCGAGATCACTCCTTTACGCAGATCTTTATACATGGAAAGTGTTCTTTTATGGTGcctgagtatatatatatattttttttgtatttggctttaaaaaaaaaaaagccgatAGATTTGTCTGTccaagtgttgttgttttttttttggtttgttcaTATCTGTTAATGATAACCTTACAGAGcctataaagaaaaaaataagctagcttgaatttttttttttttcctccgtacagaaaaaaaaagaaaaagaaaatacaaatgttTACAATATGTAATTAACCAAATAGTAAATATGCGTTTGAGAATCAATCTGTCTGTCCCTCAAAGTGGCTGTGATAGATTgatttacatttctttatttcctcTGTCGTTTTTAAACTTGAAAATGTTATGaccgttttttgttgttgtttcggttcgttactcttttttttttttttctctgacttATGAGAACAGTGCTCCCTCAACTTCagaataataactcaacaagATTCGTGTTTTCATAATACGTAGTTCTTCATCAGTCTTTGTCATTCTTTTACCTGCTGACTACTTCACCTCACACTGAGCCTTGTATATGCAGGACTGAATCCTAACTTGAGACGCTGTCGCCATCTTTtgctgtttataatgtaatgtaataatgtacgGGACGGTAGATTTCAGCATGGCTCTGCCGGGTGTTTCTCTGGTAAGGACTCAGTTAAAAGAATCTATATGGGGTGATATACCCACATGTTGTGaatagcagttaaaaaaaaaaaaaaaccgccACTTGGTGAACTTGCTTGAGTACAGTTTTAGTACATGAACAGAGTTGGAAATTCAGGAATTACTATCAAGAGCTATCATGTTCTTGATTTTGCACTACAAAACAAATGATACTCAAATGAAAAATGGTTAACTAATTTCTAAGACCAAAATGTACCCACTGTAGTCTCAGCTTGTGTGATTTCCATATCAAATATGACGTTGACAGCTGCACTTTCATTTCCCCTTTTTCTGCCTGTGTTCAGTCTTCTCACACCATCACTGCATCAGTTTGACCTGAAAGCGTGCCATTCGTTGGATTATTCTGATGTGAATGTTGTAGTGCTTTTCTCTGGTGTACAGTAGTTCATATTCAAGACCCAACTCTGAACGTTGGAGACCAGATTGGCAGTGATCCACCTGGCAATGGCCCGGGCAACATTACAGAGCAGTCAACAATTTCAAACATACATATCCACATTTTTTACACTCACAACAAGGCAACGTCTTGTCTGCTTTGCTTTACCGTGTTGCCCGACAAGTTGCCTAATGCATCACTGCCTCAGAAGCAGCAGATACACGGTTCTCAGTGCATGGCTATCAAcaatttgttctattctttctttGAAAGACAATGAATGGAAATGAACGGGGCAGTCAAATAAAGCTACTCTACACCAAAGTGCAATTGAACTCAGAGGGAGCACTGTTGTTTCAGCCAGTAGAGGCCTATTGGTTGACGTGTGCCCAACCCCTATGCACGAAAtggttcttcttctcttctattGTGTTATCCTCCCTCTGTTGGTCTGTCTTAATTCAGATgcaacattttctttctttctctctcgtGTACAGCTTGCTTCAGAGTTGTGATTGTCCTCAGACAGGTACTCTTTCATCTGTACGGTTCTTTCTTTAGGCTGATGCAATGAttttaaaagacaataaaagaTATATAAAATGACCTTC

Function

GO:

id name namespace
GO:0043551 regulation of phosphatidylinositol 3-kinase activity biological_process
GO:0007165 signal transduction biological_process
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0035014 phosphatidylinositol 3-kinase regulator activity molecular_function

KEGG:

id description
K02649 PIK3R1_2_3; phosphoinositide-3-kinase regulatory subunit alpha/beta/delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161998 lncRNA upstream 629 34568185 ~ 34568765 (+) True G120291
TU161949 lncRNA upstream 77017 34472849 ~ 34492377 (+) True LOC120567793
TU162002 lncRNA downstream 10018 34617774 ~ 34618212 (+) True G120295
TU162009 lncRNA downstream 37936 34645692 ~ 34665214 (+) False pde4ca
XR_005640791.1 lncRNA downstream 160345 34768101 ~ 34771677 (+) True LOC120568809
XR_005640792.1 lncRNA downstream 185002 34792758 ~ 34797847 (+) True LOC120568810
TU162120 lncRNA downstream 288779 34896535 ~ 34897133 (+) True G120391
XM_039816594.1 mRNA upstream 3740 34536089 ~ 34565654 (+) True mast3a
XM_039816592.1 mRNA upstream 3740 34536459 ~ 34565654 (+) False mast3a
XM_039816593.1 mRNA upstream 3913 34530555 ~ 34565481 (+) False mast3a
XM_039815192.1 mRNA upstream 136890 34425299 ~ 34432504 (+) True angptl4
XM_039816045.1 mRNA upstream 165393 34400748 ~ 34404001 (+) True rps28
XM_039815063.1 mRNA downstream 10796 34618552 ~ 34622369 (+) True ifi30
XM_039815066.1 mRNA downstream 16520 34624276 ~ 34691620 (+) False pde4ca
XM_039815064.1 mRNA downstream 16543 34624299 ~ 34691620 (+) False pde4ca
XM_039815065.1 mRNA downstream 28670 34636426 ~ 34691620 (+) False pde4ca
XM_039815067.1 mRNA downstream 28670 34636426 ~ 34691620 (+) False pde4ca
TU161934 other upstream 111783 34453722 ~ 34457611 (+) True G120249
TU161901 other upstream 165393 34400801 ~ 34404001 (+) False rps28
TU161873 other upstream 251628 34317148 ~ 34317766 (+) True G120200
TU161769 other upstream 403548 34164103 ~ 34165846 (+) False mrpl34
TU161681 other upstream 611890 33955183 ~ 33957504 (+) True LOC120568585
unassigned_transcript_567 other downstream 164318 34772074 ~ 34772146 (+) True trnar-ccu_3
unassigned_transcript_568 other downstream 164394 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_569 other downstream 168322 34776078 ~ 34776149 (+) True trnam-cau_26
XR_005640811.1 other downstream 995632 35603388 ~ 35609359 (+) False LOC120568940
unassigned_transcript_570 other downstream 1620068 36227824 ~ 36227906 (+) True trnal-uaa_3

Expression Profile