RNA id: TU162002


Basic Information

Item Value
RNA id TU162002
length 439
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G120295
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34617774 ~ 34618212 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagcgagggggctcacttcataattagaggttaatgttacaaataaatcaagcgtaaagcttgagctaatagattttaacctggtgaaatgtttagttctatccatctaaccggaccctgcttgacaccacccggagaaaaaagtgagagaaagaaaaaggagaggtcgcagttcggacgatgactgactacccggttgagattgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctcgagatcttaccacacacaaacacacgtagcagagctacccacacccatgtttctactgttgcttaatgtcagtaaattcgagtaaaatcacaggcttcgcttatcctgttcgaatgcgccagatgaaactcagacgtgggtgggtaatttataattcacacgaggtccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161997 lncRNA upstream 10018 34603860 ~ 34607756 (+) False pik3r2
TU161998 lncRNA upstream 49009 34568185 ~ 34568765 (+) True G120291
TU161947 lncRNA upstream 125397 34478275 ~ 34492377 (+) False LOC120567793
TU162009 lncRNA downstream 27480 34645692 ~ 34665214 (+) False pde4ca
XR_005640791.1 lncRNA downstream 149889 34768101 ~ 34771677 (+) True LOC120568809
XR_005640792.1 lncRNA downstream 174546 34792758 ~ 34797847 (+) True LOC120568810
TU162120 lncRNA downstream 278323 34896535 ~ 34897133 (+) True G120391
TU162122 lncRNA downstream 286934 34905146 ~ 34905390 (+) True G120393
XM_039815519.1 mRNA upstream 10018 34569394 ~ 34607756 (+) True pik3r2
XM_039815521.1 mRNA upstream 10018 34569394 ~ 34607756 (+) False pik3r2
XM_039815520.1 mRNA upstream 10018 34575253 ~ 34607756 (+) False pik3r2
XM_039816594.1 mRNA upstream 52120 34536089 ~ 34565654 (+) True mast3a
XM_039816592.1 mRNA upstream 52120 34536459 ~ 34565654 (+) False mast3a
XM_039815063.1 mRNA downstream 340 34618552 ~ 34622369 (+) True ifi30
XM_039815066.1 mRNA downstream 6064 34624276 ~ 34691620 (+) False pde4ca
XM_039815064.1 mRNA downstream 6087 34624299 ~ 34691620 (+) False pde4ca
XM_039815065.1 mRNA downstream 18214 34636426 ~ 34691620 (+) False pde4ca
XM_039815067.1 mRNA downstream 18214 34636426 ~ 34691620 (+) False pde4ca
TU161934 other upstream 160163 34453722 ~ 34457611 (+) True G120249
TU161901 other upstream 213773 34400801 ~ 34404001 (+) False rps28
TU161873 other upstream 300008 34317148 ~ 34317766 (+) True G120200
TU161769 other upstream 451928 34164103 ~ 34165846 (+) False mrpl34
TU161681 other upstream 660270 33955183 ~ 33957504 (+) True LOC120568585
unassigned_transcript_567 other downstream 153862 34772074 ~ 34772146 (+) True trnar-ccu_3
unassigned_transcript_568 other downstream 153938 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_569 other downstream 157866 34776078 ~ 34776149 (+) True trnam-cau_26
XR_005640811.1 other downstream 985176 35603388 ~ 35609359 (+) False LOC120568940
unassigned_transcript_570 other downstream 1609612 36227824 ~ 36227906 (+) True trnal-uaa_3

Expression Profile