RNA id: XM_039815065.1


Basic Information

Item Value
RNA id XM_039815065.1
length 5791
RNA type mRNA
GC content 0.46
exon number 16
gene id pde4ca
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34624276 ~ 34691620 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tggtaGAGAGGTCGTAGTGTTGGCTTTTTGGTGCTCTTTTTGGATTTCGAAAGAAGCGTACTTGAGTGTTTTAACAAGAGAGTTTTGGAGTAATAACGAGGGGGGGCCCAGGTTTAGTTCAAATATGAGGAAGCCAGGATTGGAGCAGAGGCACTAACTAAGTTCCTGGACTTGGAAAAGGCAAGAGAGACAGCTACAGAAACTGACATGTCATGGGAAAGCCCTGTAAAGTTTATTTGAGGAACCCGAGAAAAGGAGATCAGAGATTGTTCCTTGGACCAAAGTGAGCTAACGAGCAAAGGGACTAACTACCCTAACTACCTGACCACTGAGCGTCCTCTGTCCACCATGAGCGAGCTGTGCTCTGAGAGCTCCGAGGAGGAGCAGGCTGAAGCTGAGGAGAGGCCACAGGGCCGAAGGGTGACCCGGCTGCCCGTCATTCAGCTCATGTCTCGGTCTAAAGCGGGCTCCCCGGGAGGATCCCCGAAGCTCTCACCCAAAGATTCTCCACGTGGGTCCCCTCGAAACTCCCCGCTGCTGTTCCGGAGGCTGCTGATGAACCGCAGCATCAACCTCCAGAGGCGCCGCTTCACTGTGGCCCACACGCCCAGTTTTGATGTGGAGAATGGATTGGCAGTGGGGCGCAGCCCCCTGGACCCCCAGGCCAGccctggctctggctctggtcTGGTCCTGCAGGCCAACTTTCCTCACAGCCAGCGGCGGGAATCCTTCCTCTACCGCTCCGACTCCGACTTTGACCTTTCACCCAAAGGTCCTTCCAGGAACTCCTCCACCGCCAGTGACCTGGAAGAAAGCTTGAAGCACTGGGAAGTCAACTGGTTGTCAACTCGACATACAGAAGACATGATTGTCACACCATTTGCACAGGTTCTCGCCAGCCTGAGGACAGTCCGAAGTAACTTTGCCGTCATAACCGGCCAGCAAGATCGCACAGCCAGCaaGACGCGATCCTCAGGCAACAACCCTCCATCCATGTGCAAGACCAGCCTCGCAGAGGAGCCTCACCAGCAGCTGGCCATAGAGACTCTAGATGAGCTGGACTGGTGTCTGGAACAACTAGAGACACTGAAAACTCGACACTCTGTCAGCGAGATGGCCTCCAACAAGTTCAAGAGGATGCTGAACCGAGAGCTCACCCAGCTGTCAGAAACCAGCCGTTCAGGGAACCAGGTGTCTGAGTTCATCTCCAGCACCTTCCTTGAGAAACAACATGACATGGACATCATGTCTCCCCCCACCAAGGAGAAGGACAAGAAGAAGCGGCCCATGTCCCAGATCAGCGGTGTGAAGAAGGCCACCCACAGCCCCAGCCTCGCCCCCTCCACCATCCCTCGCTTTGGGGTCAACGCCAGCCAGGAAGGACTCCTAGCCAAGGAGTTGGAGGACATAAACAGATGGGGTATTGACATCTTCAAGGTCTCTGAGTATTCTGGGAAACGCCCACTGACGGTCACCATGTACACCGTCTTCCAGGAACGTGACCTGCTCAAGTCCTTCAAGATTCCTGCGGACACTTTCATTACCTTCATGATGACTTTGGAGGATCATTACCATGCCGATGTGGCCTACCACAACAACATCCATGCTGCAGACGTGGTCCAGTCCACGCATGTCTTACTGTCCACACCGGCTCTGGAGGCTGTGTTTACTGATCTGGAGATCCTCGCCGCTCTGTTTGCAAGCGCCATCCACGATGTGGATCACCCTGGAGTTTCCAATCAGTTTCTCATCAACACCAACTCAGAGCTGGCCCTGATGTACAATGACTCGTCGGTGCTGGAGAATCACCACCTGGCCGTTGGCTTCAAGCTTCTGCAGGAAGAGAACTGTGACATGTTTCAGAACCTCAGCAAAAAGCAGAGACAGTCGCTGCGCAAGATGGTCATTGATATGGTGCTGGCCACAGATATGTATAAACACATGAACCTACTGGCAGACCTGAAAACCATGGTGGAGACCAAGAAAGTCACCAGTCTAGGAGTCCTACTGCTGGACAACTACTCAGACCGCATACAGGTCCTTCAGAACATGGTGCACTGTGCCGACCTGAGCAACCCCACCAAGCCTCTGGAGCTGTACCGGCAGTGGACAGACCGCATCATGGTGGAGTTTTTCACCCAGGGGGACAGGGAGAGGGACAAAGGCATGGAGGTCAGCCCCATGTGTGACAAACACAATGCCTCAATAGAGAAGAACCAGGTGGGTTTCATTGACTACATCGTTCATCCTCTGTGGGAGACGTGGGCCGACCTTGTCCACCCAGATGCTCAGGAGATCCTGGACACGCTGGAGGATAACAGAGAGTGGTACCAGAGCATGATCCCCCACAGCCCCTCACCCCACCCAGAGGGCCCAGGGGAGGGAGCCCCTGCCGGGGAAGCCTCGGCGCTCGGTGGGGCCGGCGGCTCCATTTCGGCCGACAAGTTCCAGTTTGAGCTGACCTTGGAAGAAGAGGGAGAGTCTGATACAGAGAGTCCgcctgaggaagaggagggccACAGCGGCAGTAGGGGGCCTGAACTCTCCAAAACGGATTCTGGCAGCGGATTCAATGCGGTATCTGCTGCGACTCGTCGGCTCACTAAAAAGCTAACTAGTGATTCAGTCAGGACGTTTTCTTTAGACTCTGATAAAGATAtggcagaagagagagagacagaagaggaagGCGTCTCTGAGGTACCGCGCTTCAGACTTGGCACATAGCACCAGTCAGAAGTTATATTGCTTTtggcctttttttgtttgtttattcttCTTGATTTCGGTGCCTCTTCTGTCACTCCTCTTCTCCCACTCCAACCAAAACACCACCAACTCTGGTTTCTGCGGACAGGGTGACAGCAAGCCTCGGGGTAGGGACTACGGGAGTgcgttgggggggggggtcagcaGTCACTTGCactggagagagacagatagagtcACTGTTCTAATAGAGGACAGGAAACCAAGTTTCTGAGCGGTCCTTTGAGTTCCGTGACTTTCAGTCAGTCATACTGTGGATAAAGTTCTACAGAGACAATAAGAAGTTAAAAAGAAACTTCCCTTTTACCAGCCTACCCAAGGTCTACCACAACAAATGACAGAACTGTCTTCCTCTTTTGTGAAGAAAGCGATGAAGTGATGAAGGAGCGGGAAAACAACGACGTCTTGAAAGACATCTTGCCAAACTTGCAATTTACAGGGACAATGCTGTGTTGCctgccttttttcatttttattttgtttgttctgtTGTCTTTTATTTAGGTCCATATGCAGTGAAATGCGGTAAATGAAGATACAGTAAATAGCAAAGCAGTGTAAGCTAAGTTATGGCAGAAAGAAGCTATGCATGATTTTGTGCAGGAAACTGTAAATGCAGCAGAcatttaaagtaaagtaaacatTTTGTATAAGTAGCACTCCTTTCAGCCCATTTAATTTTGTTCAGCAAGCAGTAGTTTTGGAAGAATATGATTATAGTGAAGTGGCTGGCAGtacatataattttttttaggcTTACTATTTCCATTTTTATAATCCTAAACTGTCTGATATTGTAAAACTGAGCCAGATTCAGTGTAGTGTTATACAGTCAAGGAATTACATCCAAAGCAATGTGGGCTGTGCACATGGTGCCTCCCAGTGTTGACAAGTGGAACTGAAGTTCTGGCATTGGAGGCCAATGATTTGCAAGGTTTTGCATAGGCGTATTATTATGGAAAATACATTCAAAACATATTTAACTGTAGGACTACCCAAATATCAGTTGTGTTTCAGTTTTTTGCTCTTTTGATTCATTTTtgttggatttttctttttaaatatatgtcACTAATTTTTGCATTCTTAATATTTGGCACCCATTTTTATCAGTCTGCCTTCAAGTTTAGCACTTTATGAAAATCGTATGAACACATTGGAGGCTGATGACCGTTTGTCAATGACTGTCTAGCAACCAGCAAAAACTAAACTCTACAGTACAGCTACGAATGCATTTAGCTGTCCATTTAAATCCATTACCACATaacttgttacacacacacacacagcgttcACCTACTGAAATACTGTTTTTTGGTACCATCCACTTGCGTAAATTACTAGACTGATAAGGGCAGCGTGTTAGAAGCACAAGGGGTTGCAAAGAAGGATGTTAGCGTCTTTTTAACTGTAAAATTCAGGAGACAGTTTCCTatgccagaattttttttttttcccctccatctttttttctctcgtTGATCAATATTACGCTCTTCACAGGGACATAGTCAATGACAAAACAAGTGCCAAGCAAGCATGACACAACCCGtactgtaatttccattttgCCACTGGCTACTTTCCATCAGTGACTGATAAAGTTGGTTGATTGTAGCACCCTGTGTGCCAATCTGACCCTAGTgtctctgttcttttttttttttcttttttttactcctgTTCAAACAGTAACTGAAGCTGATACTGTCTTAGAAcagtgatgtgtttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgaatgaatgaCTTGGTTGACCTTTTTGATGTAtttgctgagaaaaaaaaaaaaccaaagcaCTTTGTATGGTACTTTTTACAGTTCTGCACTTCCAGTACAGTTGAACATGTATAACATgactttttcactgtttttctgtCGGTAAATGGTGTGGTGGTTGAGTTGAATTGCACGGGCTGCACCATGTTGGAGGGACTGaaattgttttatttgctctttTTATAATTGActgtacaaaaaaaagtgttttgttgAAATTCATGacattggctgcagggtgtgaAGAAGAGTATAGAGAACTTAGCCTGTGGAGGAacccgtttttattttattaccacGAAACGTCACGTTTCACTGGGTTAACGAGCTGAAAGGTTTCTCTTTGACGCCTTATTTTCAAACTTGGAATTTTCTTTCTGGTCATAGACGTGTTCACTGACATGCTGGGGTAAAACATGTGCAATCCTTTCTGTAGCTATATAAACAGCACCAAACAGACCAACACTCAAGGATGCCTTCAACACTAAGGACTGTTTAACAACGGCTTACGCAGCACAACATGCAAAGAttccgtctgtctctctgcgtGTCACTAATTGTTTGATTTTGTACATTTTCCTCACAGTGCTTCAtgtacagttttatttattacttcTTTACTACTGTCAGAAACGATGGAACCGTAgacttttttttagttttttttagtctGGGGTGTtagtatttacagtatgtgtagCTTGATGTGTGAGAAAGTCACACAGGACAGATTTCCACTATTAACTcagctttttttccttctcgTTTCATTTCTTTATGTCTGCAAATAACATTATACATAAGCAAAACTACTCATGTTTTTTCTTGGTATGAAAATAGTTTAGTGACAGATTTCCGTCTGAGTTTTCGGAAACGTCTCTCATCTCCTGTCTTCCTCTGTTTCCGCTGATTGGGGTCGGATCACGTGTTCATGAAGGATCTTACAGTAAGAGCGCTGATCTGAGACCTTTTTGGATTCATAGTGAAGATTATATAGTCACACGGCCTCAAGTCATCCTAGCTCAGTATTTCTGTTTTTAGAGACTTTATGGGTCATGAACAAAGACTGCAGCTTTGACAATCGAAACTCTGCTGTTTAACTGCGGGTGTGTTAGCCCTCACTCCAACTAGAACTGTATGCCTTGCCAATAAAGGAAAAGCTCTTCACTCTTT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162002 lncRNA upstream 18214 34617774 ~ 34618212 (+) True G120295
TU161997 lncRNA upstream 28670 34603860 ~ 34607756 (+) False pik3r2
TU161998 lncRNA upstream 67661 34568185 ~ 34568765 (+) True G120291
XR_005640613.1 lncRNA upstream 144049 34486215 ~ 34492377 (+) False LOC120567793
XR_005640791.1 lncRNA downstream 76481 34768101 ~ 34771677 (+) True LOC120568809
XR_005640792.1 lncRNA downstream 101138 34792758 ~ 34797847 (+) True LOC120568810
TU162120 lncRNA downstream 204915 34896535 ~ 34897133 (+) True G120391
TU162122 lncRNA downstream 213526 34905146 ~ 34905390 (+) True G120393
TU162125 lncRNA downstream 261705 34953325 ~ 34954407 (+) True LOC120568917
XM_039815063.1 mRNA upstream 14057 34618552 ~ 34622369 (+) True ifi30
XM_039815519.1 mRNA upstream 28670 34569394 ~ 34607756 (+) True pik3r2
XM_039815521.1 mRNA upstream 28670 34569394 ~ 34607756 (+) False pik3r2
XM_039815520.1 mRNA upstream 28670 34575253 ~ 34607756 (+) False pik3r2
XM_039816592.1 mRNA upstream 70772 34536459 ~ 34565654 (+) False mast3a
XM_039815555.1 mRNA downstream 1007 34692627 ~ 34707973 (+) False LOC120568198
XM_039815556.1 mRNA downstream 1142 34692762 ~ 34707973 (+) True LOC120568198
XM_039815558.1 mRNA downstream 23356 34714976 ~ 34718058 (+) True pgpep1
XM_039815559.1 mRNA downstream 23456 34715076 ~ 34719870 (+) False pgpep1
XM_039816510.1 mRNA downstream 29930 34721550 ~ 34743010 (+) True LOC120568804
TU161934 other upstream 178815 34453722 ~ 34457611 (+) True G120249
TU161901 other upstream 232425 34400801 ~ 34404001 (+) False rps28
TU161873 other upstream 318660 34317148 ~ 34317766 (+) True G120200
TU161769 other upstream 470580 34164103 ~ 34165846 (+) False mrpl34
TU161681 other upstream 678922 33955183 ~ 33957504 (+) True LOC120568585
unassigned_transcript_567 other downstream 80454 34772074 ~ 34772146 (+) True trnar-ccu_3
unassigned_transcript_568 other downstream 80530 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_569 other downstream 84458 34776078 ~ 34776149 (+) True trnam-cau_26
XR_005640811.1 other downstream 911768 35603388 ~ 35609359 (+) False LOC120568940
unassigned_transcript_570 other downstream 1536204 36227824 ~ 36227906 (+) True trnal-uaa_3

Expression Profile