RNA id: XM_039816519.1


Basic Information

Item Value
RNA id XM_039816519.1
length 2510
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC120568808
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34787168 ~ 34792767 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAGGGACGGTCATAAGTGGGCAGGACTTAAAGCTCCGGACACAGCAGCAGAGGTGCTGCAGAGTTCAGACCTGGAGCTCCGTGTGCAGGCTCAGCGAGACCGGAGCTTTCTGCGGTGCTGAACCGCTCCTGAggctgctggtgctgctgctgctggatcaTCACTCCAAGTTTCCCATCACATGTACTCATCTGTGACAACAGCCGGGAAGTATCTTGATGACTGAATCCCCAAATGAAGACATTCCTGGTGATGAAAATAGACAACTCACTGCAACACGACCAACTGAAACGCAGCTTATTTACAACCTGCAAGCCCTTTGATTGATCCATGGAACATCATCTTCAGCCACTCGATTGGGATTTCTTTGCACTTTGTAATCACAATAAATGCCCCTCTAGGGCTGCTACAGGATAACACTTCACAAATGGACAAATAAACTGAGGATCGTGCCGATGATTTGAAGTTAAAGCCGTGACCTCGGCTTTTGTATTGTTGACTACTCTTGAGGGATCTACTGTAATGAAACACTCACTGAGCATGCCTCGGCTTGCTGCTCGGCTCGCCAGAGGGCTTATTCATTTGCGCTACTAATTTGCCCCGCGGTAGATCTGCTGAAACTATTTCTTTGCCCTGTGGCCTTGTGGGAAACACTGTGGCCGAGTTCAATCTGTTGACATCTGCCAAATTTTTAACATGTGATCTCCTTCTGGGTTTAGAAATCAAACTCGCTATAACAAAGGTGACCCTGCAGAGCCATGCATGTTCCTCATCTCTTCTGACTGCAAAATAAAACCTACACAGCAAACAATTTGAACCGTCAAAACATTCCCTCACTTCCACGATGAGTGACACAAACTACTGGGTTGTGGACTATGAAGTCTCCTCTCCTGCTCCGCCCGGCTTCCCCAGGGGCCCGGCGGTGCTGCAGCCCACGGCAGGGCACCCCGAGCAGGGAACGGCCCTGTGTTTTGTTGGCCTCCTcgttctgctgctgctctttctGGTTGTTCGCTGCATCCGTATCTTATTAGACCCGTACAGCAGCATGCCGTCATCCTCGTGGACGGACCATAAGGACGGGCTGGACAGAGGACAGTTTGATTATGCGCTGGTGTGAAGATAAGGGGTGATCaggagatggagagaaggaTGAATTTGGAGACATGTAAAGGTTTTTTTGAGGGACTTCACTGTTTAAAGCTCCTGAAAATGAAACTGTTTGTTGTTTGGATGGGGTACTGGAATGCAATGCTGTAAAGATagcagcataaaaaaaaacattaaaccgTATCTTGTATGAGGATTTAATTCAGAGAGAAATGGAGGAGACGTACCAGAAGTCCTGCATCCATTTTAATTCACAGTAAATTAATGATGTATTGGAGACTTATGGTGTGTATGATGTCACACTGCAGCTTCTAGAGTAACACTGCAGGAAGAGGGTGATCAGTATCGCAGCATTACGTTAAGACTCCTGTTTGTCATGTCATTTTGTAATTCTATAATGTGTTTACAAATCCCAGGGCTGAATTATAAAAAGAGAGCAGAGCTGCTGCAAGAGAGGCTCTGATTGAATAAAAGAGAAATCGAATAAGTTTAGGGCAGACATGGAAGTCATTTAGACAGAATTAATATGCACTATTACAGCAGATTTAAAGCGAGATCGTCAACTGTATATGACGTTTTActgttgaaatgtaaaaatgacagCTTTGAGCCTTTTTGGGAAATGCATCTGAACCAAGAATTCAGAAGATGTCGTAGTTTCTCTGAAACTGGaaaccttttatttttaatgtgaaCTATGCTGGGTATTGTAAGGTATTTGTACCACCTCTAACATGATCCTCAGGTAAAATGATTCCTAACTAACCAAAGCCTCTATAATTCGAGGGAATCACTTGATTTGTCTTCTGAAATTGTTTGTGACTCTattttctttcaaattccctgTGTCCTAAATTTCAATCTCATCTCATTATGAAAGCTGATGTATTATAATACATAACAGTTAACAcaacatatttttatttgagGTTTTGCTAGTTCATGTCGCAATCCCTTTAAGAGGCTTATGAAGCTCAGTTGTGATTATGAAATGCATCTATACCAATTTCCTCTCCCTAATCCTTTTTGCCTTTAGGGTTAGTGCACCAGCCAAATCAGTTCAACAGTGCCTGTAGGAATATGTGAAAAGCTAATATCTATTTCATACAAATTTTACcttttgccttttgttttgtaatattgTTTCTGCCCTTATTAAAGTGAAAAGTCCTctctttataaaacaaaaaatggttaagtattgatatttgattgatttgttaaaaagttgatTTGTTTCATTAATGATGACCAAAAGACTATTTATTATACCAACCTATTGTATATGGTCCAGCTTCCTGGATGTAGACTCTTGGTtgtaaaaaaagttattttcctaatgtttcttcaaactggtattctgtttttttgttatgaaataaaaagcttttgTCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162091 lncRNA downstream 42510 34741217 ~ 34744658 (-) True G120365
TU162057 lncRNA downstream 154031 34632905 ~ 34633137 (-) True G120341
TU162045 lncRNA downstream 177718 34609086 ~ 34609450 (-) True G120332
TU162038 lncRNA downstream 218324 34568078 ~ 34568844 (-) True G120325
TU161908 lncRNA downstream 383155 34400823 ~ 34404013 (-) True G120230
TU162103 lncRNA upstream 17129 34809896 ~ 34819589 (-) True G120374
TU162108 lncRNA upstream 33753 34826520 ~ 34826763 (-) True G120379
TU162123 lncRNA upstream 112390 34905157 ~ 34905380 (-) True G120394
TU162124 lncRNA upstream 124533 34917300 ~ 34917535 (-) True G120395
TU162147 lncRNA upstream 172378 34965145 ~ 34965538 (-) False G120416
XM_039816512.1 mRNA downstream 5162 34771789 ~ 34782006 (-) False LOC120568806
XM_039816511.1 mRNA downstream 5162 34771789 ~ 34782006 (-) True LOC120568806
XM_039815554.1 mRNA downstream 74581 34710574 ~ 34712587 (-) True LOC120568197
XM_039814837.1 mRNA downstream 274131 34510848 ~ 34513037 (-) True LOC120567794
XM_039814834.1 mRNA downstream 284476 34486051 ~ 34502692 (-) False crtc1a
XM_039816520.1 mRNA upstream 9089 34801856 ~ 34814127 (-) True LOC120568811
XM_039816668.1 mRNA upstream 34346 34827113 ~ 34834390 (-) True LOC120568916
XM_039814712.1 mRNA upstream 56542 34849309 ~ 34850649 (-) True LOC120567735
XM_039816476.1 mRNA upstream 69285 34862052 ~ 34863627 (-) True LOC120568778
XM_039814671.1 mRNA upstream 79017 34871784 ~ 34873121 (-) True LOC120567702
unassigned_transcript_566 other downstream 18654 34768441 ~ 34768514 (-) True trnan-guu_9
TU161906 other downstream 383155 34400823 ~ 34404013 (-) False G120230
TU161838 other downstream 558118 34228626 ~ 34229050 (-) True G120168
unassigned_transcript_565 other downstream 602080 34185016 ~ 34185088 (-) True trnak-cuu_2
TU161606 other downstream 1127892 33654302 ~ 33659276 (-) True G119989
TU162119 other upstream 102812 34895579 ~ 34895913 (-) True G120390
TU162164 other upstream 219641 35012408 ~ 35014214 (-) False LOC120567704
TU162546 other upstream 1918443 36711210 ~ 36737250 (-) False LOC120567714
unassigned_transcript_582 other upstream 2207050 36999817 ~ 36999899 (-) True trnal-uaa_10
unassigned_transcript_583 other upstream 2211193 37003960 ~ 37004042 (-) True trnal-caa_5

Expression Profile