RNA id: TU162122


Basic Information

Item Value
RNA id TU162122
length 245
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G120393
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34905146 ~ 34905390 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attaggacaatgcacattaatcaacatttctataaatgcgccagtgttagccagtcggctaattttcaactgtagtcctagttgcatgcatgtctttagggtgggaagaaaccggagcatccggaggaaacccacgcaagcacggggagaacatgcaaactccacacagaaaggcctgggttcaaacccagaaccttcttgctgtgaggcagaagtgctaaccactgagccaccgtgctgccttC

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
ko04310 Wnt signaling pathway
ko05217 Basal cell carcinoma
ko05224 Breast cancer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162120 lncRNA upstream 8013 34896535 ~ 34897133 (+) True G120391
XR_005640792.1 lncRNA upstream 107299 34792758 ~ 34797847 (+) True LOC120568810
XR_005640791.1 lncRNA upstream 133469 34768101 ~ 34771677 (+) True LOC120568809
TU162009 lncRNA upstream 239932 34645692 ~ 34665214 (+) False pde4ca
TU162002 lncRNA upstream 286934 34617774 ~ 34618212 (+) True G120295
TU162125 lncRNA downstream 47935 34953325 ~ 34954407 (+) True LOC120568917
XR_005640805.1 lncRNA downstream 48151 34953541 ~ 34954407 (+) False LOC120568917
TU162127 lncRNA downstream 59756 34965146 ~ 34965540 (+) True G120397
TU162141 lncRNA downstream 100204 35005594 ~ 35005806 (+) True G120410
TU162142 lncRNA downstream 104791 35010181 ~ 35011042 (+) True G120411
XM_039816523.1 mRNA upstream 80325 34809892 ~ 34824821 (+) False LOC120568812
XM_039816521.1 mRNA upstream 80325 34816450 ~ 34824821 (+) True LOC120568812
XM_039816516.1 mRNA upstream 138815 34743728 ~ 34766331 (+) False LOC120568807
XM_039816995.1 mRNA downstream 260268 35165658 ~ 35168716 (+) False LOC120569116
XM_039816996.1 mRNA downstream 260757 35166147 ~ 35168716 (+) True LOC120569116
XM_039814983.1 mRNA downstream 356168 35261558 ~ 35262902 (+) True LOC120567912
XM_039814677.1 mRNA downstream 526289 35431679 ~ 35443813 (+) True LOC120567707
XM_039816699.1 mRNA downstream 689488 35594878 ~ 35642033 (+) True LOC120568940
unassigned_transcript_569 other upstream 128997 34776078 ~ 34776149 (+) True trnam-cau_26
unassigned_transcript_568 other upstream 132925 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_567 other upstream 133000 34772074 ~ 34772146 (+) True trnar-ccu_3
TU161934 other upstream 447535 34453722 ~ 34457611 (+) True G120249
TU161901 other upstream 501145 34400801 ~ 34404001 (+) False rps28
XR_005640811.1 other downstream 697998 35603388 ~ 35609359 (+) False LOC120568940
unassigned_transcript_570 other downstream 1322434 36227824 ~ 36227906 (+) True trnal-uaa_3
unassigned_transcript_571 other downstream 1323065 36228455 ~ 36228537 (+) True trnal-uaa_4
unassigned_transcript_572 other downstream 1323663 36229053 ~ 36229135 (+) True trnal-caa
unassigned_transcript_573 other downstream 1329693 36235083 ~ 36235153 (+) True trnal-uaa_5

Expression Profile