RNA id: TU162127


Basic Information

Item Value
RNA id TU162127
length 332
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G120397
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34965146 ~ 34965540 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctttctccctcctcctctcggtgatgctctccctccatatcttcaccgctgtggtcttctccacctcctcctgtccctggtcgccttggccttgtattctgtctctgtcgcgtttctgttgcccttttctctctccttccacctcttttctctctccttccacctcttctctctctccttccacttcttctctctctccttccaccacatcttctccatctaccttgctcacttgttcattttctatttctctcgcctttctctttggagacaaaaactgaatatgctACCTTTCCTTTACCTTTCTGTACGATTCAAAGTAACaatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162125 lncRNA upstream 10739 34953325 ~ 34954407 (+) True LOC120568917
XR_005640805.1 lncRNA upstream 10739 34953541 ~ 34954407 (+) False LOC120568917
TU162122 lncRNA upstream 59756 34905146 ~ 34905390 (+) True G120393
TU162120 lncRNA upstream 68013 34896535 ~ 34897133 (+) True G120391
XR_005640792.1 lncRNA upstream 167299 34792758 ~ 34797847 (+) True LOC120568810
TU162141 lncRNA downstream 40054 35005594 ~ 35005806 (+) True G120410
TU162142 lncRNA downstream 44641 35010181 ~ 35011042 (+) True G120411
TU162223 lncRNA downstream 239572 35205112 ~ 35205709 (+) True G120483
TU162237 lncRNA downstream 354381 35319921 ~ 35320221 (+) True G120497
TU162238 lncRNA downstream 373199 35338739 ~ 35339004 (+) True G120498
XM_039816523.1 mRNA upstream 140325 34809892 ~ 34824821 (+) False LOC120568812
XM_039816521.1 mRNA upstream 140325 34816450 ~ 34824821 (+) True LOC120568812
XM_039816516.1 mRNA upstream 198815 34743728 ~ 34766331 (+) False LOC120568807
XM_039816995.1 mRNA downstream 200118 35165658 ~ 35168716 (+) False LOC120569116
XM_039816996.1 mRNA downstream 200607 35166147 ~ 35168716 (+) True LOC120569116
XM_039814983.1 mRNA downstream 296018 35261558 ~ 35262902 (+) True LOC120567912
XM_039814677.1 mRNA downstream 466139 35431679 ~ 35443813 (+) True LOC120567707
XM_039816699.1 mRNA downstream 629338 35594878 ~ 35642033 (+) True LOC120568940
unassigned_transcript_569 other upstream 188997 34776078 ~ 34776149 (+) True trnam-cau_26
unassigned_transcript_568 other upstream 192925 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_567 other upstream 193000 34772074 ~ 34772146 (+) True trnar-ccu_3
TU161934 other upstream 507535 34453722 ~ 34457611 (+) True G120249
TU161901 other upstream 561145 34400801 ~ 34404001 (+) False rps28
XR_005640811.1 other downstream 637848 35603388 ~ 35609359 (+) False LOC120568940
unassigned_transcript_570 other downstream 1262284 36227824 ~ 36227906 (+) True trnal-uaa_3
unassigned_transcript_571 other downstream 1262915 36228455 ~ 36228537 (+) True trnal-uaa_4
unassigned_transcript_572 other downstream 1263513 36229053 ~ 36229135 (+) True trnal-caa
unassigned_transcript_573 other downstream 1269543 36235083 ~ 36235153 (+) True trnal-uaa_5

Expression Profile