RNA id: XM_039816699.1


Basic Information

Item Value
RNA id XM_039816699.1
length 4316
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC120568940
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 35594878 ~ 35642033 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAATCTCTCTAGTTAGTTCACTTTGTCCGTGTTGTGACGCTGATTTTCTCCATGTTCAACTCTTGCAGGTGTTTCCTCTCCAGATGAAGGTGTGGACCCTGCTATGAGTCAGTGTGAGGACCGAGAGGAGGGAGTCCCTCCCTCTAAAACCACTCTGTGTGGGGAACATGATAGCCAGACCAAAGCTCAGAGTTCCcagcaggagagaggaaagTCCCCTGTATCgagctgtgtgtccatgaagagtgaTATGTCTATGGATGACATGATTTACTTCGAAGATGGACGTCGTTCTCATGAGTCAGTcCCAGAGAAGCAGCACaaacctggacctggacctggatCCGGACCTGGATCCGGACCTGGACCCAGCTGTGTTTTCATGAAGAGTGACGAGTCTATGGGTGAACCTATATTCTTCAAAGATGGACACCACTCTGTAGATCAAAGagtggaccaggagaactcagaggttcccagtggtcagtctgcccagcagcatcaaacacacctggactccatatttatgctgctggaggaggatATTGGCACTTTTATGAAGAAcgagctgaagaagatccacgaggttctgagtccagattacccagaaggcttagagagtcagagggaggatgaggaggtgtTGGATGctgaggatgaagagcagaggaggagcagcagagaggcatttctgaagatcacattgcacttcctgaggagaaggaaggaggaggagctggCTGAACGTCTGCAGAGCAGAAGTCTTGCTGCAGGTGGTAAACGTAAACTAAAATCTAAGCTGCAGAAGAAGTTCCAGTctgtgtttgaggggattgctaaagcaggaaacccaaccattctgaatcagatgttcacagagatctacatcatagagggagggactgcagaggtcaatgatgaacatgaggtcagacagattgaaacagcatccaggaaaccagacagaccagaaacaacaatcagacgagaagacatctttaaaaccccatgtggaagagatgaaccaatcagaacagtgatgacaaagggagtggctggcatcgggaaaacagtcttaacacagaagttcactctggactgggctgaagacaaagccaaccaggacatccagttcacatttccattcactttcagagagctgaatgtgctgaaagaggaAAAGTACAGCTTGCTGGAACTTGTTGATCGCTTCTTtggtgaaaccaaagaagcaggaatctgcaggtttgaagaggtcgtgttcatctttgacggtctggatgagtgtcgacttcctctggacttccacaacactgagatcctgactgatgttacagagtccacctcagtggatgtgctgctgacaaacctcatcagggggaaactgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatcagatccctcctgagtgtgttgacatgatgtcagaggtcagagggttcactgactCAAaaaaggaggagtacttcaggaagagattcagagatgaggagcaggccagcAAAATCAtttcccacatcaagacatcacgaagcctccacatcatgtgccacatcccagtcttctgctggatcactgctacagttctggaggacgtgttgaagaccagagaaggaggagagctgcccaagaccctgactgacatgtacatccacttcctggttgttcagtccaaagtgaagaacatcaagtatgatggaggagctgagacagatccacactggagtccagagagcaggaagatgatcgagtctctgggaaaactggcttttgagcagctgcagaaagggaacatgatcttctatgaatcagacctgagagagtgtggcatcgatatcagagcagcctcagtgtactcaggagtgttcacacagatctttaaagaggagagaggactgtaccaggacaaggtgttctgcttcattcatttgagtgttcaggagtttctggctgctcttcatgtccatctgacattcatcaactctggagtcaacctgctggcagaagaacaaacaacctcctggtggtggtggttgtttCTCTTCAGAAACAAACCTGAACCATCACAgttctaccagagtgctgtggacaaggtcttacagagtccaaatggacacctggacttgttcctccgcttcctcctgggtctttcactgcagaccaatcagagtCTCCTACAAGGTCTGCTGACACAGACAGGAGGTAGCTCACAGACTAATCAGAAAACAGTTGAGTACATCAAGAATAAGATCAGTAagaatctgtctgcagagagaagcatcaatctgttccactgtctgaatgaactgaattaTCATTCTCTAGTGGAGCAGATCCAACAGTCCCtgagttcaggaagtctctccacagataaactatctcctgctcagtggtcagctctggtcttcatattactgtcatcagaaaaagatctggacgtgtttgacctgaagaaatactctgcatcagaggaggctcttctgaggctgctgccagtggtcaaagcttCCAACAAAGcactgctgagtggctgtaacctgtcagagagaagctgtgaagctctgtcctcagttctcagctcccagtcctctagtctgagagagctggacctgagtaacaacaacctgcaggattcaggagtgaagcagctgtcggctggactgaagagtccacactgcagactggaaactctcagGTTGAGTGgatgtaacctgtcagagagaaactgtgaagctctgtcctcagttctcagctcccagtcctctagtatgagagagctggacctgagtaacaacgagctacaggattcaggagtgaagcagctgtcggctggactgaagagtccacactgcagactggtAACTCTCAGGACGGACCATTGTGGAGTGCAGTGGTTGAGACCTGGTCTGAGGAAGTATGTCTGTGAACTggaactggacacaaacacagtaaacaGACACCtaaaactgtctgacaacaacaggaaggtgacaggTGTGGGAGAGGATCAGTTATATCCAGATCATCCTGACAGATTTGACTACTggcctcagctgctgtgtagaaatGGTCtaactggtcgctgttactgggaggttgagGCGAGAGGAAGGGTTtctatatcagtgagttacagaggaatcagaaggagaggaaacagtgatgactgtgtgtttggagggaatgatcagtcctggagtctgagcTGCTATGATGATGGTTACTCTGTCTGGCACAATAACAGAAGAACAGAGCTcacttcctcctctgtctctaacagagtagcagtgtatgtggactgtcctgctggcactctgtccttctacaccgtctcctctgactcactgacccacctccacaccttcaacaccacattcactcaaccTCTTTATCCTGGGTTTATGGTCCCctctggttcctcagtgtctctatGTCCTCTGCAGGACTGAGAGTCTCTCCTGTGGACAGAAACTCTGAATGAAGTTCAGCTGCTGAAATCAAAGTTCAGTCTgttcaccatcacacacactacagacCAAACATGAATAACTTGTGCCAATAAATCATATTTACACAGACATTTGTTTAATGCAATCAATAGATTATCTCAGACGTCAATCTCTGTTCATACTGTCACACAACAATGTGGGTATCGATCCATTAGATCTCGCAGCATAGTTTCCTCTTTGACAAACAAAATAAGATTATATAGACAACATCTGGGGAAGCACGGCAGTTAAACTGTCTGCTCTTTATGAATtactttttacttgtacttCACTTTGCTTTGTGTTACTTAGATTTTAATATGTATGATcttgaatgtttttatgtaaagcacattaTGATTCTCTCTGTGAAAAGTGTTCTTTAAATAAAGCTATGTTGAATTAATCAGAAAGCAGCAACGATTCATAAGAAAAACTTAAATTCATGTCTCACtattcttgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagaatgggGGGGTTGTGCACACttgatcatgtgtgtgtgtgtacctgtaatATGAGATGTATTTTATTGCTATTTGTTATCCGTTTCTTTTTTTACTAACTGAGCATTGTTtggtttttaaattgttgtatttgtgCTTTCTGTGGGACTACAGATGCAAATTAGCCTAAGGCTAACTCTGGTGCAATGCATTAAAtgattacatttatgtttaaattgCACACTGTCCCTTACAAATAAAATCGAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640794.1 lncRNA upstream 33968 35559341 ~ 35560910 (+) True LOC120568837
TU162256 lncRNA upstream 34021 35559363 ~ 35560857 (+) False LOC120568837
TU162238 lncRNA upstream 255874 35338739 ~ 35339004 (+) True G120498
TU162237 lncRNA upstream 274657 35319921 ~ 35320221 (+) True G120497
TU162223 lncRNA upstream 389169 35205112 ~ 35205709 (+) True G120483
TU162273 lncRNA downstream 6427 35648460 ~ 35648739 (+) True G120526
XR_005640604.1 lncRNA downstream 13916 35655949 ~ 35659245 (+) True LOC120567666
TU162299 lncRNA downstream 23136 35665169 ~ 35665393 (+) True G120549
TU162302 lncRNA downstream 36559 35678592 ~ 35678966 (+) True G120552
TU162320 lncRNA downstream 117660 35759693 ~ 35760228 (+) True G120568
XM_039814677.1 mRNA upstream 151065 35431679 ~ 35443813 (+) True LOC120567707
XM_039814983.1 mRNA upstream 331976 35261558 ~ 35262902 (+) True LOC120567912
XM_039816995.1 mRNA upstream 426162 35165658 ~ 35168716 (+) False LOC120569116
XM_039816996.1 mRNA upstream 426162 35166147 ~ 35168716 (+) True LOC120569116
XM_039816523.1 mRNA upstream 770057 34809892 ~ 34824821 (+) False LOC120568812
XM_039816721.1 mRNA downstream 807004 36449037 ~ 36463662 (+) True pold3
XM_039816722.1 mRNA downstream 807004 36449037 ~ 36463662 (+) False pold3
XM_039814682.1 mRNA downstream 923728 36565761 ~ 36583870 (+) True LOC120567713
XM_039816061.1 mRNA downstream 946621 36588654 ~ 36620596 (+) True LOC120568503
XM_039816062.1 mRNA downstream 982044 36624077 ~ 36710812 (+) True LOC120568504
unassigned_transcript_569 other upstream 818729 34776078 ~ 34776149 (+) True trnam-cau_26
unassigned_transcript_568 other upstream 822657 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_567 other upstream 822732 34772074 ~ 34772146 (+) True trnar-ccu_3
TU161934 other upstream 1137267 34453722 ~ 34457611 (+) True G120249
TU161901 other upstream 1190877 34400801 ~ 34404001 (+) False rps28
unassigned_transcript_570 other downstream 585791 36227824 ~ 36227906 (+) True trnal-uaa_3
unassigned_transcript_571 other downstream 586422 36228455 ~ 36228537 (+) True trnal-uaa_4
unassigned_transcript_572 other downstream 587020 36229053 ~ 36229135 (+) True trnal-caa
unassigned_transcript_573 other downstream 593050 36235083 ~ 36235153 (+) True trnal-uaa_5
unassigned_transcript_574 other downstream 595734 36237767 ~ 36237849 (+) True trnal-uaa_6

Expression Profile