RNA id: TU162328


Basic Information

Item Value
RNA id TU162328
length 264
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G120575
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 35775960 ~ 35776223 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggggaatgtgacatgttgggtgagagagaagttatccagtaaaattttgaattctgatgagagcttgcatgtgggggagtccatgtggatgtttaagtcaccgagtagcagcagacgtggagagagagatgaggctagtgtgaggagttcagtaaaatcagagaggaaggagggatttggtttaggtggccggtaaatgaggatgactgtcatggaggaaagagttttgaaggcgagatattcaaacgatgatactgaggggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162320 lncRNA upstream 15732 35759693 ~ 35760228 (+) True G120568
TU162302 lncRNA upstream 96994 35678592 ~ 35678966 (+) True G120552
TU162299 lncRNA upstream 110567 35665169 ~ 35665393 (+) True G120549
XR_005640604.1 lncRNA upstream 116715 35655949 ~ 35659245 (+) True LOC120567666
TU162273 lncRNA upstream 127221 35648460 ~ 35648739 (+) True G120526
TU162336 lncRNA downstream 19959 35796182 ~ 35827870 (+) False G120582
XR_005640690.1 lncRNA downstream 46202 35822425 ~ 35830257 (+) True LOC120568242
TU162335 lncRNA downstream 49633 35825856 ~ 35827870 (+) True G120582
TU162370 lncRNA downstream 112423 35888646 ~ 35888885 (+) True G120611
TU162372 lncRNA downstream 113663 35889886 ~ 35890255 (+) True G120613
XM_039816699.1 mRNA upstream 133927 35594878 ~ 35642033 (+) True LOC120568940
XM_039814677.1 mRNA upstream 332147 35431679 ~ 35443813 (+) True LOC120567707
XM_039814983.1 mRNA upstream 513058 35261558 ~ 35262902 (+) True LOC120567912
XM_039816995.1 mRNA upstream 607244 35165658 ~ 35168716 (+) False LOC120569116
XM_039816721.1 mRNA downstream 672814 36449037 ~ 36463662 (+) True pold3
XM_039816722.1 mRNA downstream 672814 36449037 ~ 36463662 (+) False pold3
XM_039814682.1 mRNA downstream 789538 36565761 ~ 36583870 (+) True LOC120567713
XM_039816061.1 mRNA downstream 812431 36588654 ~ 36620596 (+) True LOC120568503
XM_039816062.1 mRNA downstream 847854 36624077 ~ 36710812 (+) True LOC120568504
XR_005640811.1 other upstream 166601 35603388 ~ 35609359 (+) False LOC120568940
unassigned_transcript_569 other upstream 999811 34776078 ~ 34776149 (+) True trnam-cau_26
unassigned_transcript_568 other upstream 1003739 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_567 other upstream 1003814 34772074 ~ 34772146 (+) True trnar-ccu_3
TU161934 other upstream 1318349 34453722 ~ 34457611 (+) True G120249
unassigned_transcript_570 other downstream 451601 36227824 ~ 36227906 (+) True trnal-uaa_3
unassigned_transcript_571 other downstream 452232 36228455 ~ 36228537 (+) True trnal-uaa_4
unassigned_transcript_572 other downstream 452830 36229053 ~ 36229135 (+) True trnal-caa
unassigned_transcript_573 other downstream 458860 36235083 ~ 36235153 (+) True trnal-uaa_5
unassigned_transcript_574 other downstream 461544 36237767 ~ 36237849 (+) True trnal-uaa_6

Expression Profile