RNA id: TU162372


Basic Information

Item Value
RNA id TU162372
length 370
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G120613
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 35889886 ~ 35890255 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccggccgcggctgtcgatacgttccctgttttttccaatgtttccgtcaggtccgcgtcatataaaaactccaaacaccgaccacacgtaaagtcaccataaacttcattcacgccatatactcactcacaacaacacaaattgactgcgctcaccaacaacacctcatcacttccggtatgtggtacattccctttccgtgaagaatctgtcatttgtaaatttgtttcgggacaggtaaaagtgttttgcatcttgttaatttgttttctaaaatgtaaatttgttttcgaaaatgtaaatttgttttctaaaatgttattttgttttccaaaatgtaaatttgttttctaaaacgtaaatttgtttt

Function

GO:

id name namespace
GO:0042559 pteridine-containing compound biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162370 lncRNA upstream 1001 35888646 ~ 35888885 (+) True G120611
XR_005640690.1 lncRNA upstream 59629 35822425 ~ 35830257 (+) True LOC120568242
TU162336 lncRNA upstream 62016 35796182 ~ 35827870 (+) False G120582
TU162335 lncRNA upstream 62016 35825856 ~ 35827870 (+) True G120582
TU162328 lncRNA upstream 113663 35775960 ~ 35776223 (+) True G120575
TU162436 lncRNA downstream 298078 36188333 ~ 36188558 (+) True G120675
XR_005640756.1 lncRNA downstream 314296 36204551 ~ 36206241 (+) True LOC120568724
TU162439 lncRNA downstream 331164 36221419 ~ 36221770 (+) True G120678
TU162477 lncRNA downstream 514298 36404553 ~ 36404765 (+) True G120714
TU162483 lncRNA downstream 521489 36411744 ~ 36558732 (+) True G120720
XM_039816699.1 mRNA upstream 247853 35594878 ~ 35642033 (+) True LOC120568940
XM_039814677.1 mRNA upstream 446073 35431679 ~ 35443813 (+) True LOC120567707
XM_039814983.1 mRNA upstream 626984 35261558 ~ 35262902 (+) True LOC120567912
XM_039816995.1 mRNA upstream 721170 35165658 ~ 35168716 (+) False LOC120569116
XM_039816721.1 mRNA downstream 558782 36449037 ~ 36463662 (+) True pold3
XM_039816722.1 mRNA downstream 558782 36449037 ~ 36463662 (+) False pold3
XM_039814682.1 mRNA downstream 675506 36565761 ~ 36583870 (+) True LOC120567713
XM_039816061.1 mRNA downstream 698399 36588654 ~ 36620596 (+) True LOC120568503
XM_039816062.1 mRNA downstream 733822 36624077 ~ 36710812 (+) True LOC120568504
XR_005640811.1 other upstream 280527 35603388 ~ 35609359 (+) False LOC120568940
unassigned_transcript_569 other upstream 1113737 34776078 ~ 34776149 (+) True trnam-cau_26
unassigned_transcript_568 other upstream 1117665 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_567 other upstream 1117740 34772074 ~ 34772146 (+) True trnar-ccu_3
TU161934 other upstream 1432275 34453722 ~ 34457611 (+) True G120249
unassigned_transcript_570 other downstream 337569 36227824 ~ 36227906 (+) True trnal-uaa_3
unassigned_transcript_571 other downstream 338200 36228455 ~ 36228537 (+) True trnal-uaa_4
unassigned_transcript_572 other downstream 338798 36229053 ~ 36229135 (+) True trnal-caa
unassigned_transcript_573 other downstream 344828 36235083 ~ 36235153 (+) True trnal-uaa_5
unassigned_transcript_574 other downstream 347512 36237767 ~ 36237849 (+) True trnal-uaa_6

Expression Profile