RNA id: TU162436


Basic Information

Item Value
RNA id TU162436
length 226
lncRNA type inter_gene
GC content 0.67
exon number 1
gene id G120675
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36188333 ~ 36188558 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cTGAGGGGTATCGCCTTCGCCGACGGCCTCCTGAGGGGTAtcgccttcgccgccggcctccagagggatatcgccttcgccgccggccgcCAGAGGGGTATAGCATTCGACGGCGGCCGCCTGAGAGACTTCCCCGTCCTGTTCGTCCTCCTGAGGGGATTCGCCGTTGCAGACGGCCTCCTACGAACCCTCACCGTTCTGTTCGGCCGTCTGAGGGGTTCTGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162372 lncRNA upstream 298078 35889886 ~ 35890255 (+) True G120613
TU162370 lncRNA upstream 299448 35888646 ~ 35888885 (+) True G120611
XR_005640690.1 lncRNA upstream 358076 35822425 ~ 35830257 (+) True LOC120568242
TU162336 lncRNA upstream 360463 35796182 ~ 35827870 (+) False G120582
TU162335 lncRNA upstream 360463 35825856 ~ 35827870 (+) True G120582
XR_005640756.1 lncRNA downstream 15993 36204551 ~ 36206241 (+) True LOC120568724
TU162439 lncRNA downstream 32861 36221419 ~ 36221770 (+) True G120678
TU162477 lncRNA downstream 215995 36404553 ~ 36404765 (+) True G120714
TU162483 lncRNA downstream 223186 36411744 ~ 36558732 (+) True G120720
TU162586 lncRNA downstream 631005 36819563 ~ 36819774 (+) True G120796
XM_039816699.1 mRNA upstream 546300 35594878 ~ 35642033 (+) True LOC120568940
XM_039814677.1 mRNA upstream 744520 35431679 ~ 35443813 (+) True LOC120567707
XM_039814983.1 mRNA upstream 925431 35261558 ~ 35262902 (+) True LOC120567912
XM_039816995.1 mRNA upstream 1019617 35165658 ~ 35168716 (+) False LOC120569116
XM_039816721.1 mRNA downstream 260479 36449037 ~ 36463662 (+) True pold3
XM_039816722.1 mRNA downstream 260479 36449037 ~ 36463662 (+) False pold3
XM_039814682.1 mRNA downstream 377203 36565761 ~ 36583870 (+) True LOC120567713
XM_039816061.1 mRNA downstream 400096 36588654 ~ 36620596 (+) True LOC120568503
XM_039816062.1 mRNA downstream 435519 36624077 ~ 36710812 (+) True LOC120568504
XR_005640811.1 other upstream 578974 35603388 ~ 35609359 (+) False LOC120568940
unassigned_transcript_569 other upstream 1412184 34776078 ~ 34776149 (+) True trnam-cau_26
unassigned_transcript_568 other upstream 1416112 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_567 other upstream 1416187 34772074 ~ 34772146 (+) True trnar-ccu_3
TU161934 other upstream 1730722 34453722 ~ 34457611 (+) True G120249
unassigned_transcript_570 other downstream 39266 36227824 ~ 36227906 (+) True trnal-uaa_3
unassigned_transcript_571 other downstream 39897 36228455 ~ 36228537 (+) True trnal-uaa_4
unassigned_transcript_572 other downstream 40495 36229053 ~ 36229135 (+) True trnal-caa
unassigned_transcript_573 other downstream 46525 36235083 ~ 36235153 (+) True trnal-uaa_5
unassigned_transcript_574 other downstream 49209 36237767 ~ 36237849 (+) True trnal-uaa_6

Expression Profile