RNA id: TU162454


Basic Information

Item Value
RNA id TU162454
length 249
lncRNA type intronic
GC content 0.44
exon number 1
gene id G120691
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36188879 ~ 36189127 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agataacacaagacaggtgacacaagggctgggaaacaggtgaaacacattaggcagggcagagcaatcaacaaaaggagggaaacacaagacaggaagtaaagtggacaagacaagacagaaaaccagagacttcaaaataaaacaggaaacagagcacaaaacagaccaccaaaataagacaagacaccaaaaccataacagtacCCCCCCCCAAGGGACAGATCCCAGATGTCCAAAAAAACAAGA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162425 lncRNA downstream 97536 36090825 ~ 36091343 (-) True G120665
TU162424 lncRNA downstream 141173 36047464 ~ 36047706 (-) True G120664
TU162391 lncRNA downstream 269720 35918879 ~ 35919159 (-) True G120631
TU162382 lncRNA downstream 285656 35902961 ~ 35903223 (-) True G120623
TU162376 lncRNA downstream 289921 35898253 ~ 35898958 (-) True G120617
TU162464 lncRNA upstream 24790 36213917 ~ 36214154 (-) True G120701
TU162470 lncRNA upstream 185371 36374498 ~ 36374785 (-) True G120707
TU162478 lncRNA upstream 215430 36404557 ~ 36404783 (-) True G120715
TU162527 lncRNA upstream 378734 36567861 ~ 36568187 (-) True G120748
TU162545 lncRNA upstream 430709 36619836 ~ 36622411 (-) True G120762
XM_039814679.1 mRNA downstream 224825 35962591 ~ 35964054 (-) True LOC120567710
XM_039816952.1 mRNA downstream 255127 35928630 ~ 35933752 (-) False LOC120569092
XM_039816951.1 mRNA downstream 255665 35928630 ~ 35933214 (-) True LOC120569092
XM_039816629.1 mRNA downstream 274600 35911587 ~ 35914279 (-) True LOC120568882
XM_039815623.1 mRNA downstream 352849 35826950 ~ 35836030 (-) True tyw3
XM_039814680.1 mRNA upstream 276485 36465612 ~ 36481320 (-) True LOC120567712
XM_039814558.1 mRNA upstream 312674 36501801 ~ 36560647 (-) True LOC120567636
XM_039814683.1 mRNA upstream 520982 36710109 ~ 36737136 (-) False LOC120567714
XM_039816267.1 mRNA upstream 975721 37164848 ~ 37204970 (-) False LOC120568634
XM_039816266.1 mRNA upstream 975721 37164848 ~ 37204970 (-) True LOC120568634
TU162164 other downstream 1174665 35012408 ~ 35014214 (-) False LOC120567704
TU162119 other downstream 1292966 34895579 ~ 34895913 (-) True G120390
unassigned_transcript_566 other downstream 1420365 34768441 ~ 34768514 (-) True trnan-guu_9
TU161906 other downstream 1784866 34400823 ~ 34404013 (-) False G120230
TU161838 other downstream 1959829 34228626 ~ 34229050 (-) True G120168
TU162546 other upstream 522083 36711210 ~ 36737250 (-) False LOC120567714
unassigned_transcript_582 other upstream 810690 36999817 ~ 36999899 (-) True trnal-uaa_10
unassigned_transcript_583 other upstream 814833 37003960 ~ 37004042 (-) True trnal-caa_5
unassigned_transcript_584 other upstream 815474 37004601 ~ 37004683 (-) True trnal-uaa_11
unassigned_transcript_585 other upstream 849384 37038511 ~ 37038593 (-) True trnal-caa_6

Expression Profile