RNA id: TU162480


Basic Information

Item Value
RNA id TU162480
length 569
RNA type TUCP
GC content 0.63
exon number 1
gene id G120717
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36406121 ~ 36406689 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tccatcattgcccacgtgtgcattgaagtcccccagcagaacaatggagtcccccactggcgccccatgcaggactccactcaaggtctccaagaaggccgaatactccgaactcctgtttggtgcatatgcacaaacaacagtcagagttttcccccccacaacccgcaggcgtagggaggcgaccctctcgtccaccggggtaaactccaacgtagcggcgctcagccgggggcttgttagtatccccacacccgcccggcgcctcacaccctgggcaactccggagaagaaaagagtccaacccctatccaggagtacggttccagaaccgagactgtgcgtagaggtaagccccaccagatcataccggtagcgctccacctcccgcaccagttccggctccttcccccacagagaggtgacgttccacgtccccagagccagcgtctgctgcccgggtctggtccgtcgaggcccctgaccttcaccgccacccatgtggcagcgcacccgaccccagcggttcctcccacaggtggtgggcccatgggctggagagatgggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162477 lncRNA upstream 1356 36404553 ~ 36404765 (+) True G120714
TU162439 lncRNA upstream 184351 36221419 ~ 36221770 (+) True G120678
XR_005640756.1 lncRNA upstream 199880 36204551 ~ 36206241 (+) True LOC120568724
TU162436 lncRNA upstream 217563 36188333 ~ 36188558 (+) True G120675
TU162372 lncRNA upstream 515866 35889886 ~ 35890255 (+) True G120613
TU162483 lncRNA downstream 5055 36411744 ~ 36558732 (+) True G120720
TU162586 lncRNA downstream 412874 36819563 ~ 36819774 (+) True G120796
TU162604 lncRNA downstream 457104 36863793 ~ 36865529 (+) False LOC120568212
XR_005640683.1 lncRNA downstream 457110 36863799 ~ 36866140 (+) True LOC120568212
XR_005640684.1 lncRNA downstream 464662 36871351 ~ 36875394 (+) True LOC120568213
XM_039816699.1 mRNA upstream 764088 35594878 ~ 35642033 (+) True LOC120568940
XM_039814677.1 mRNA upstream 962308 35431679 ~ 35443813 (+) True LOC120567707
XM_039814983.1 mRNA upstream 1143219 35261558 ~ 35262902 (+) True LOC120567912
XM_039816995.1 mRNA upstream 1237405 35165658 ~ 35168716 (+) False LOC120569116
XM_039816721.1 mRNA downstream 42348 36449037 ~ 36463662 (+) True pold3
XM_039816722.1 mRNA downstream 42348 36449037 ~ 36463662 (+) False pold3
XM_039814682.1 mRNA downstream 159072 36565761 ~ 36583870 (+) True LOC120567713
XM_039816061.1 mRNA downstream 181965 36588654 ~ 36620596 (+) True LOC120568503
XM_039816062.1 mRNA downstream 217388 36624077 ~ 36710812 (+) True LOC120568504
TU162479 other upstream 348 36405240 ~ 36405773 (+) True G120716
unassigned_transcript_581 other upstream 156594 36249445 ~ 36249527 (+) True trnal-caa_4
unassigned_transcript_580 other upstream 163517 36242522 ~ 36242604 (+) True trnal-uaa_9
unassigned_transcript_579 other upstream 163852 36242187 ~ 36242269 (+) True trnal-caa_3
unassigned_transcript_578 other upstream 164303 36241736 ~ 36241818 (+) True trnal-uaa_8
TU162632 other downstream 604310 37010999 ~ 37018790 (+) False LOC120568208
TU162730 other downstream 896205 37302894 ~ 37306014 (+) True G120914
TU162816 other downstream 1605188 38011877 ~ 38019038 (+) False LOC120568367
unassigned_transcript_597 other downstream 1790352 38197041 ~ 38197122 (+) True trnas-cga_7
TU162901 other downstream 2348995 38755684 ~ 38755931 (+) True G121058

Expression Profile