RNA id: TU162546


Basic Information

Item Value
RNA id TU162546
length 1028
RNA type TUCP
GC content 0.54
exon number 4
gene id LOC120567714
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36709295 ~ 36737250 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGACCTGGAATCAGTTCCCTGGTGGCTGATGCCGTTGAGTATTTTAGTGAGAATCAGATTCACTCGATCAGACATTTAATGTGAGACCGACCTTCAGCTGCAGATGTGAAGGGGTGAAGAGGTGAAGGGGTTAAACTGGAGGTAACACGAGCTTCCAGTTTCCTGCAGGATCCGGTTACCTGCAGGTGAATCTGAAAGTCGATCAAACTGAAAGGGAAGTTGCATCAAAAGGAGAAACAAAGCTTCATCAGACGCGATGCAAGAACGTGAAGAATCCGaagcaggaaggagaaggagaagaagaagtatGGATAAACCTGAAAACATGTCGGAGGTGAGACTGGTTGTTGTTGGGAGGACTGGGTCAGGGAAGAGCTCCAGTGGAAACACCATACTGGGAGGACCAACCTTCACTGCAGACGTCAGCCGTCTGTCCGtCACTAAACAGTGCCGTAAGCAGACCGGTGAGGTGTGCAACAGGCAGGTGACCATCGTCGACACCCCCGGCCTCTTCGACACCTCGCAGGAGGACGAACATGTAAAGCGAGAGGTCGCCAAATGCATCAACATGTCGGCGCCGGGGCCCCACGCCATCCTGCTGGTCATCAAGCTGGGGCCTTTCACGGCAGAGGAGCGAGACGCCGTCGGGAAGGTGGAGGAGATCTTTGGAGAGGATGCCTGGAAGTACACCATCGTCCTCTTCACATACGGAGACCGGGTCACGTCGGACTTCACGCAGCTGGTGGAGAAGGCCGGGCCCGAGCTGCAGACGATCCTGGAGAAGGTGGAGAACCGGTACCACGTCTTCAACAACCTCAAAGCCAACGATCGCGGACAGGTGCTGGGCCTGCTGGAGAAGGTGGAGGAGATGGTCGGTGCCAACGGAGGACGGTTTTACTCCAACTACACCTACGAGGAGGTGTCCAAGATGCTGCtcaagagagaggaggagctcAGAGAGTTCTACGACAAGAAACTGGAGGAAAGTATCAGATGTGTGGAGTCAAAGTACGAGAAGAAGCTGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162571 lncRNA downstream 192 36709295 ~ 36711018 (-) True LOC120567714
TU162570 lncRNA downstream 430 36709295 ~ 36710780 (-) False LOC120567714
TU162561 lncRNA downstream 5575 36704136 ~ 36705635 (-) True G120775
TU162545 lncRNA downstream 88799 36619836 ~ 36622411 (-) True G120762
TU162527 lncRNA downstream 143023 36567861 ~ 36568187 (-) True G120748
XR_005640748.1 lncRNA upstream 65822 36803072 ~ 36803641 (-) True LOC120568685
TU162585 lncRNA upstream 81948 36819198 ~ 36819421 (-) True G120795
XR_005640685.1 lncRNA upstream 131848 36869098 ~ 36870208 (-) True LOC120568215
TU162644 lncRNA upstream 323397 37060647 ~ 37060846 (-) True G120845
TU162645 lncRNA upstream 342052 37079302 ~ 37079531 (-) True G120846
XM_039814558.1 mRNA downstream 150563 36501801 ~ 36560647 (-) True LOC120567636
XM_039814680.1 mRNA downstream 229890 36465612 ~ 36481320 (-) True LOC120567712
XM_039816408.1 mRNA downstream 365684 36143287 ~ 36345526 (-) True LOC120568723
XM_039814679.1 mRNA downstream 747156 35962591 ~ 35964054 (-) True LOC120567710
XM_039816952.1 mRNA downstream 777458 35928630 ~ 35933752 (-) False LOC120569092
XM_039816267.1 mRNA upstream 427598 37164848 ~ 37204970 (-) False LOC120568634
XM_039816266.1 mRNA upstream 427598 37164848 ~ 37204970 (-) True LOC120568634
XM_039814684.1 mRNA upstream 508973 37246223 ~ 37288374 (-) True LOC120567715
XM_039815708.1 mRNA upstream 559854 37297104 ~ 37331410 (-) False LOC120568299
XM_039815707.1 mRNA upstream 562939 37300189 ~ 37331422 (-) True LOC120568299
TU162164 other downstream 1696996 35012408 ~ 35014214 (-) False LOC120567704
TU162119 other downstream 1815297 34895579 ~ 34895913 (-) True G120390
unassigned_transcript_566 other downstream 1942696 34768441 ~ 34768514 (-) True trnan-guu_9
TU161906 other downstream 2307197 34400823 ~ 34404013 (-) False G120230
TU161838 other downstream 2482160 34228626 ~ 34229050 (-) True G120168
unassigned_transcript_582 other upstream 262567 36999817 ~ 36999899 (-) True trnal-uaa_10
unassigned_transcript_583 other upstream 266710 37003960 ~ 37004042 (-) True trnal-caa_5
unassigned_transcript_584 other upstream 267351 37004601 ~ 37004683 (-) True trnal-uaa_11
unassigned_transcript_585 other upstream 301261 37038511 ~ 37038593 (-) True trnal-caa_6
unassigned_transcript_586 other upstream 301582 37038832 ~ 37038914 (-) True trnal-uaa_12

Expression Profile