RNA id: TU162570


Basic Information

Item Value
RNA id TU162570
length 1462
lncRNA type sense_over
GC content 0.48
exon number 2
gene id LOC120567714
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36709295 ~ 36737250 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGTTTGATAAAGCAGACAGTCACTCTCCAAAGTTTACATTCAACCATCTTTCATTCACCTGAGACGCAGGTAAAGCTCCACATCCCCAGTTCATAACTTTTATTTCATCTGTCGGTTACACAATGATCACGGAATAGTGATTTCTCCCTCGTATCATATCGTTTAACATTCcaggcatacatacatactttttATTTACCATTTGTACAATAAAGTCATtaaatccattcatccatccaccTCACCCACATCACGCGCATTAAACACTGTACACGTATCAACGGAGTCATGATTAAAGGCCGCCTGCCTTCACTTTTAATATCCACGAGTCGAGGAAAGACAGAGCAGAGTACCGTTTGCTTCTTTCAAGTTCTGACTGCTGCGAGCTGATTTGTTCTTAACGCCGAATGGAGAAGGTGACgtgcagatatatatatattacaggcTGAAACCGCTTTATGTGTTCAGAGGACCCTGGTCCGGTATTTCAGGAATTACAGGAAGAAAAGGAAGGAGAAGTATTCGGAGGGAGATGGAAAGAGGTAGAAGGGGAgcaaaatatttacattaatAAAGAGAAGGTGAAAGGGAGAGCGGTATGGAAAGGACAGAAAATGGTCAAAGAATCATCCCTCCTTCTACTTACTTCTCTTAGCGTCTAAACATCTAAAGCCAAGCACAGTAGTTTGGTTACTTCTGTTGGTTCAACCAGTGTAGTTCATACAGGAGTGATGAGTCTTTACAGGGTCATATACAGTAGGTACATataggacatacagtacagtacattgtCCAACCTCCAATACTGACGCTTCCTCTGGAACAGAGGCTACTGAGGCCCActcttcttctgctgctgctgctgctgctgctgctttggtCTCAGGGAGTCTGTGCAGTAGCAGAGGCTTGTCTGGAACTGTGTATTAGTTTTAGGAATCCAGTGTAGGAACAGGACAATGTCGCCTTTGCAGTAAAGGGGCACAAATGCAGCTGCAGGAGGAAAGGGTCTAAACGTGTTTTGTTTGCTAGTTAGTGACCTCTACGTTTTGGTTCTGGACTTATTGGAGTGGCTTTGGTCCGGAGGTCGTACGAATGGAGAAGCCAGAGACCGCGGGTTGGTTTGAGATGAAGAGAAGCTGGCCCGGGCCGGACCAGGCCAAGCCAagccaggccaggccaggccgGGCCGTCTTTGGCAGGGCCATGCTGGGTTAGGAAGAGCTCTGCGtttgggagggagagagagtggaagaagaaaaaaaggctcATCCTCCGGCATCTCTTTCTACCTGCCGAAAATGTTCTCGTACTCCAGCAGTATGAGCTCCACTATCTGGTTCTGGTAGACCATGTGGACCGCAATGTTCCAGGTCTCCATTTCAGGCCGCAGCAGCGTGGGGCCGAACACGATGGCCACGCTCTGGGTGGTCATCCGGTTCTCCTCCCCGTGGTCGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162561 lncRNA downstream 3660 36704136 ~ 36705635 (-) True G120775
TU162545 lncRNA downstream 86884 36619836 ~ 36622411 (-) True G120762
TU162527 lncRNA downstream 141108 36567861 ~ 36568187 (-) True G120748
TU162478 lncRNA downstream 304512 36404557 ~ 36404783 (-) True G120715
TU162470 lncRNA downstream 334510 36374498 ~ 36374785 (-) True G120707
XR_005640748.1 lncRNA upstream 92292 36803072 ~ 36803641 (-) True LOC120568685
TU162585 lncRNA upstream 108418 36819198 ~ 36819421 (-) True G120795
XR_005640685.1 lncRNA upstream 158318 36869098 ~ 36870208 (-) True LOC120568215
TU162644 lncRNA upstream 349867 37060647 ~ 37060846 (-) True G120845
TU162645 lncRNA upstream 368522 37079302 ~ 37079531 (-) True G120846
XM_039814558.1 mRNA downstream 148648 36501801 ~ 36560647 (-) True LOC120567636
XM_039814680.1 mRNA downstream 227975 36465612 ~ 36481320 (-) True LOC120567712
XM_039816408.1 mRNA downstream 363769 36143287 ~ 36345526 (-) True LOC120568723
XM_039814679.1 mRNA downstream 745241 35962591 ~ 35964054 (-) True LOC120567710
XM_039816951.1 mRNA downstream 776081 35928630 ~ 35933214 (-) True LOC120569092
XM_039816267.1 mRNA upstream 454068 37164848 ~ 37204970 (-) False LOC120568634
XM_039816266.1 mRNA upstream 454068 37164848 ~ 37204970 (-) True LOC120568634
XM_039814684.1 mRNA upstream 535443 37246223 ~ 37288374 (-) True LOC120567715
XM_039815708.1 mRNA upstream 586324 37297104 ~ 37331410 (-) False LOC120568299
XM_039815707.1 mRNA upstream 589409 37300189 ~ 37331422 (-) True LOC120568299
TU162164 other downstream 1695081 35012408 ~ 35014214 (-) False LOC120567704
TU162119 other downstream 1813382 34895579 ~ 34895913 (-) True G120390
unassigned_transcript_566 other downstream 1940781 34768441 ~ 34768514 (-) True trnan-guu_9
TU161906 other downstream 2305282 34400823 ~ 34404013 (-) False G120230
TU161838 other downstream 2480245 34228626 ~ 34229050 (-) True G120168
TU162546 other upstream 430 36711210 ~ 36737250 (-) False LOC120567714
unassigned_transcript_582 other upstream 289037 36999817 ~ 36999899 (-) True trnal-uaa_10
unassigned_transcript_583 other upstream 293180 37003960 ~ 37004042 (-) True trnal-caa_5
unassigned_transcript_584 other upstream 293821 37004601 ~ 37004683 (-) True trnal-uaa_11
unassigned_transcript_585 other upstream 327731 37038511 ~ 37038593 (-) True trnal-caa_6

Expression Profile