RNA id: XM_039814683.1


Basic Information

Item Value
RNA id XM_039814683.1
length 989
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC120567714
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 36709295 ~ 36737250 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAAGAGGTGAAGGGGTTAAACTGGAGGTAACACGAGCTTCCAGTTTCCTGCAGGATCCGGTTACCTGCAGGTGAATCTGAAAGTCGATCAAACTGAAAGGGAAGTTGCATCAAAAGGAGAAACAAAGCTTCATCAGACGCGATGCAAGAACGTGAAGAATCCGaagcaggaaggagaaggagaagaagaagtatGGATAAACCTGAAAACATGTCGGAGGTGAGACTGGTTGTTGTTGGGAGGACTGGGTCAGGGAAGAGCTCCAGTGGAAACACCATACTGGGAGGACCAACCTTCACTGCAGACGTCAGCCGTCTGTCCGtCACTAAACAGTGCCGTAAGCAGACCGGTGAGGTGTGCAACAGGCAGGTGACCATCGTCGACACCCCCGGCCTCTTCGACACCTCGCAGGAGGACGAACATGTAAAGCGAGAGGTCGCCAAATGCATCAACATGTCGGCGCCGGGGCCCCACGCCATCCTGCTGGTCATCAAGCTGGGGCCTTTCACGGCAGAGGAGCGAGACGCCGTCGGGAAGGTGGAGGAGATCTTTGGAGAGGATGCCTGGAAGTACACCATCGTCCTCTTCACATACGGAGACCGGGTCACGTCGGACTTCACGCAGCTGGTGGAGAAGGCCGGGCCCGAGCTGCAGACGATCCTGGAGAAGGTGGAGAACCGGTACCACGTCTTCAACAACCTCAAAGCCAACGATCGCGGACAGGTGCTGGGCCTGCTGGAGAAGGTGGAGGAGATGGTCGGTGCCAACGGAGGACGGTTTTACTCCAACTACACCTACGAGGAGGTGTCCAAGATGCTGCtcaagagagaggaggagctcAGAGAGTTCTACGACAAGAAACTGGAGGAAAGTATCAGATGTGTGGAGTCAAAGTACGAGAAGAAGCTGAGCAGAGATGCACAGATTCAATgccaggagaaaaaaaagagaaaaaacacgGCTGAAGGAGGGCGTCTAAACATCTAA

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162561 lncRNA downstream 4474 36704136 ~ 36705635 (-) True G120775
TU162545 lncRNA downstream 87698 36619836 ~ 36622411 (-) True G120762
TU162527 lncRNA downstream 141922 36567861 ~ 36568187 (-) True G120748
TU162478 lncRNA downstream 305326 36404557 ~ 36404783 (-) True G120715
TU162470 lncRNA downstream 335324 36374498 ~ 36374785 (-) True G120707
XR_005640748.1 lncRNA upstream 65936 36803072 ~ 36803641 (-) True LOC120568685
TU162585 lncRNA upstream 82062 36819198 ~ 36819421 (-) True G120795
XR_005640685.1 lncRNA upstream 131962 36869098 ~ 36870208 (-) True LOC120568215
TU162644 lncRNA upstream 323511 37060647 ~ 37060846 (-) True G120845
TU162645 lncRNA upstream 342166 37079302 ~ 37079531 (-) True G120846
XM_039814558.1 mRNA downstream 149462 36501801 ~ 36560647 (-) True LOC120567636
XM_039814680.1 mRNA downstream 228789 36465612 ~ 36481320 (-) True LOC120567712
XM_039816408.1 mRNA downstream 364583 36143287 ~ 36345526 (-) True LOC120568723
XM_039814679.1 mRNA downstream 746055 35962591 ~ 35964054 (-) True LOC120567710
XM_039816952.1 mRNA downstream 776357 35928630 ~ 35933752 (-) False LOC120569092
XM_039816267.1 mRNA upstream 427712 37164848 ~ 37204970 (-) False LOC120568634
XM_039816266.1 mRNA upstream 427712 37164848 ~ 37204970 (-) True LOC120568634
XM_039814684.1 mRNA upstream 509087 37246223 ~ 37288374 (-) True LOC120567715
XM_039815708.1 mRNA upstream 559968 37297104 ~ 37331410 (-) False LOC120568299
XM_039815707.1 mRNA upstream 563053 37300189 ~ 37331422 (-) True LOC120568299
TU162164 other downstream 1695895 35012408 ~ 35014214 (-) False LOC120567704
TU162119 other downstream 1814196 34895579 ~ 34895913 (-) True G120390
unassigned_transcript_566 other downstream 1941595 34768441 ~ 34768514 (-) True trnan-guu_9
TU161906 other downstream 2306096 34400823 ~ 34404013 (-) False G120230
TU161838 other downstream 2481059 34228626 ~ 34229050 (-) True G120168
unassigned_transcript_582 other upstream 262681 36999817 ~ 36999899 (-) True trnal-uaa_10
unassigned_transcript_583 other upstream 266824 37003960 ~ 37004042 (-) True trnal-caa_5
unassigned_transcript_584 other upstream 267465 37004601 ~ 37004683 (-) True trnal-uaa_11
unassigned_transcript_585 other upstream 301375 37038511 ~ 37038593 (-) True trnal-caa_6
unassigned_transcript_586 other upstream 301696 37038832 ~ 37038914 (-) True trnal-uaa_12

Expression Profile