RNA id: TU162645


Basic Information

Item Value
RNA id TU162645
length 230
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G120846
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 37079302 ~ 37079531 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcgtgcttgtgtgtgggcGGGGGGGCAGAATTGCATGCACTTTGTGcacaacaaagtctgattgatttgtaatgctaaaatagtcattagatagttgcatgcagtatggacgccactgtaaagctactcaagatgggcttctctccctgatctcatcagaaatggctctccttcctcttcttccctcctcctcctcctcctcctcgctgttatcccctgtctcttcctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162644 lncRNA downstream 18456 37060647 ~ 37060846 (-) True G120845
XR_005640685.1 lncRNA downstream 209094 36869098 ~ 36870208 (-) True LOC120568215
TU162585 lncRNA downstream 259881 36819198 ~ 36819421 (-) True G120795
XR_005640748.1 lncRNA downstream 275661 36803072 ~ 36803641 (-) True LOC120568685
TU162571 lncRNA downstream 368284 36709295 ~ 36711018 (-) True LOC120567714
TU162647 lncRNA upstream 8563 37088094 ~ 37088876 (-) True G120848
TU162665 lncRNA upstream 72018 37151549 ~ 37151884 (-) True G120865
TU162708 lncRNA upstream 183785 37263316 ~ 37293476 (-) False LOC120567715
TU162759 lncRNA upstream 215423 37294954 ~ 37296912 (-) True G120936
TU162823 lncRNA upstream 927288 38006819 ~ 38007058 (-) True G120990
XM_039814683.1 mRNA downstream 342166 36710109 ~ 36737136 (-) False LOC120567714
XM_039814558.1 mRNA downstream 518655 36501801 ~ 36560647 (-) True LOC120567636
XM_039814680.1 mRNA downstream 597982 36465612 ~ 36481320 (-) True LOC120567712
XM_039816408.1 mRNA downstream 733776 36143287 ~ 36345526 (-) True LOC120568723
XM_039814679.1 mRNA downstream 1115248 35962591 ~ 35964054 (-) True LOC120567710
XM_039816267.1 mRNA upstream 85317 37164848 ~ 37204970 (-) False LOC120568634
XM_039816266.1 mRNA upstream 85317 37164848 ~ 37204970 (-) True LOC120568634
XM_039814684.1 mRNA upstream 166692 37246223 ~ 37288374 (-) True LOC120567715
XM_039815708.1 mRNA upstream 217573 37297104 ~ 37331410 (-) False LOC120568299
XM_039815707.1 mRNA upstream 220658 37300189 ~ 37331422 (-) True LOC120568299
unassigned_transcript_596 other downstream 17767 37061453 ~ 37061535 (-) True trnal-uaa_18
unassigned_transcript_595 other downstream 23302 37055918 ~ 37056000 (-) True trnal-caa_10
unassigned_transcript_594 other downstream 24591 37054629 ~ 37054711 (-) True trnal-uaa_17
unassigned_transcript_593 other downstream 28232 37050988 ~ 37051070 (-) True trnal-uaa_16
unassigned_transcript_592 other downstream 31200 37048020 ~ 37048102 (-) True trnal-uaa_15
TU162701 other upstream 148404 37227935 ~ 37233477 (-) True G120891
TU162801 other upstream 544410 37623941 ~ 37667980 (-) False LOC120567663
TU162876 other upstream 1355185 38434716 ~ 38435172 (-) True G121035
TU163045 other upstream 2297167 39376698 ~ 39376991 (-) True G121181

Expression Profile